Wall clock time and date at job start Tue Mar 31 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21250 * 119.99878 * 0.02562 * 3 2 1 5 5 C 1.47162 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.39875 * 120.17081 * 359.72728 * 5 3 2 7 7 C 1.37874 * 119.82250 * 179.72531 * 6 5 3 8 8 C 1.38428 * 120.17123 * 0.54778 * 7 6 5 9 9 C 1.38376 * 120.35065 * 359.72310 * 8 7 6 10 10 S 1.76201 * 119.91637 * 180.02562 * 9 8 7 11 11 O 1.42102 * 106.39999 * 23.52210 * 10 9 8 12 12 O 1.42098 * 106.40033 * 156.43804 * 10 9 8 13 13 N 1.65593 * 107.21880 * 269.98001 * 10 9 8 14 14 C 1.36943 * 120.00158 * 64.99710 * 13 10 9 15 15 H 1.07996 * 119.99723 * 359.97438 * 14 13 10 16 16 C 1.38808 * 120.00299 * 179.97438 * 14 13 10 17 17 N 1.31627 * 119.99831 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00338 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46731 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47034 * 119.99758 * 18 16 14 21 21 H 1.48499 * 109.47294 * 240.00405 * 18 16 14 22 22 C 1.37911 * 120.17165 * 359.97438 * 9 8 7 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 28 28 H 1.07992 * 120.08907 * 359.97438 * 6 5 3 29 29 H 1.07995 * 119.91108 * 180.25181 * 7 6 5 30 30 H 1.08000 * 119.82251 * 179.74737 * 8 7 6 31 31 H 0.97006 * 120.00241 * 244.99779 * 13 10 9 32 32 H 0.97003 * 119.99854 * 180.02562 * 17 16 14 33 33 H 1.08002 * 120.08865 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2443 2.3424 0.0005 5 6 3.4791 1.6898 -0.0006 6 6 4.3913 0.6294 0.0046 7 6 5.7452 0.8896 -0.0017 8 6 6.2026 2.1961 -0.0017 9 6 5.3066 3.2506 -0.0012 10 16 5.9014 4.9092 -0.0019 11 8 7.2130 4.8648 -0.5469 12 8 4.8602 5.7086 -0.5461 13 7 6.0676 5.3710 1.5796 14 6 6.9864 4.7486 2.3818 15 1 7.6024 3.9562 1.9831 16 6 7.1261 5.1360 3.7074 17 7 6.3750 6.1015 4.1935 18 14 8.3790 4.2865 4.8019 19 1 9.0910 3.2428 4.0214 20 1 9.3584 5.2851 5.3007 21 1 7.6842 3.6565 5.9532 22 6 3.9492 3.0068 -0.0011 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 4.0360 -0.3904 0.0095 29 1 6.4507 0.0719 -0.0018 30 1 7.2644 2.3935 -0.0025 31 1 5.5140 6.0825 1.9379 32 1 6.4728 6.3725 5.1197 33 1 3.2511 3.8308 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040862565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:07 Heat of formation + Delta-G solvation = -116.940418 kcal Electronic energy + Delta-G solvation = -19823.437900 eV Core-core repulsion = 16554.067793 eV Total energy + Delta-G solvation = -3269.370107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.13990 -39.29725 -38.12682 -36.76689 -36.48415 -34.06104 -32.85535 -32.33356 -32.17679 -26.64178 -26.41856 -24.49159 -23.36392 -21.21917 -20.11633 -19.93994 -18.90156 -18.29111 -17.07732 -16.98774 -16.67601 -16.47016 -16.33638 -16.10371 -15.54003 -15.15833 -14.85184 -14.40013 -13.87878 -13.68081 -13.38434 -13.18369 -13.14326 -13.07924 -13.04404 -12.88790 -12.76450 -12.52236 -12.27842 -12.13509 -12.01922 -11.84211 -11.64485 -10.75936 -10.44695 -10.17749 -10.11324 -8.31935 -5.90413 -0.51672 -0.32325 -0.03026 1.29018 1.48392 1.51087 1.62336 2.25640 2.49800 2.66988 2.90699 2.93678 3.21043 3.57976 3.79165 3.85777 3.98492 4.14724 4.22986 4.29019 4.43986 4.60213 4.76426 4.84341 4.99251 5.06300 5.06459 5.10317 5.11912 5.19730 5.33867 5.59659 5.76015 6.48821 6.70933 6.96038 7.30334 8.87055 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.005487 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.065369 B = 5101.646308 C = 5499.105111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.160 4.160 3 C 0.392 3.608 4 O -0.499 6.499 5 C -0.211 4.211 6 C -0.009 4.009 7 C -0.143 4.143 8 C -0.005 4.005 9 C -0.688 4.688 10 S 2.667 3.333 11 O -0.989 6.989 12 O -1.018 7.018 13 N -0.977 5.977 14 C -0.312 4.312 15 H 0.114 0.886 16 C -0.021 4.021 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.249 1.249 20 H -0.282 1.282 21 H -0.278 1.278 22 C 0.004 3.996 23 H 0.091 0.909 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.193 0.807 29 H 0.183 0.817 30 H 0.146 0.854 31 H 0.405 0.595 32 H 0.272 0.728 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 -18.807 -5.588 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.273 3.727 4 O -0.377 6.377 5 C -0.212 4.212 6 C -0.027 4.027 7 C -0.162 4.162 8 C -0.024 4.024 9 C -0.774 4.774 10 S 2.760 3.240 11 O -0.979 6.979 12 O -1.008 7.008 13 N -0.729 5.729 14 C -0.446 4.446 15 H 0.132 0.868 16 C -0.222 4.222 17 N -0.575 5.575 18 Si 0.810 3.190 19 H -0.172 1.172 20 H -0.208 1.208 21 H -0.204 1.204 22 C -0.016 4.016 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.148 0.852 27 H 0.152 0.848 28 H 0.210 0.790 29 H 0.200 0.800 30 H 0.164 0.836 31 H 0.239 0.761 32 H 0.081 0.919 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.339 -17.887 -6.322 19.462 hybrid contribution -0.086 0.482 1.139 1.240 sum -4.425 -17.405 -5.183 18.692 Atomic orbital electron populations 1.21631 0.94083 1.03056 1.01641 1.22096 0.97961 0.92076 1.07523 1.23288 0.86807 0.93255 0.69377 1.90532 1.59040 1.49799 1.38369 1.20943 0.96718 0.93947 1.09625 1.22215 0.92166 0.99968 0.88335 1.21799 0.97001 0.96519 1.00846 1.21528 0.99813 0.93004 0.88073 1.31179 1.02491 1.25708 1.18071 1.02935 0.72819 0.74735 0.73528 1.93461 1.38639 1.87607 1.78214 1.93434 1.58730 1.69623 1.78976 1.51347 1.47106 1.44365 1.30122 1.19591 1.12842 1.18827 0.93379 0.86847 1.26091 1.00306 0.97506 0.98339 1.69827 1.41477 1.29884 1.16279 0.84967 0.77590 0.78408 0.78075 1.17194 1.20826 1.20422 1.21108 0.93423 0.98236 0.88821 0.89065 0.93919 0.93614 0.85161 0.84789 0.78951 0.80018 0.83639 0.76093 0.91927 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.20 71.98 0.66 -1.61 16 2 C -0.16 -2.14 5.03 29.85 0.15 -1.99 16 3 C 0.39 10.16 7.12 28.03 0.20 10.36 16 4 O -0.50 -17.65 15.98 -2.94 -0.05 -17.70 16 5 C -0.21 -5.88 5.87 -20.15 -0.12 -6.00 16 6 C -0.01 -0.17 9.47 22.58 0.21 0.04 16 7 C -0.14 -2.97 10.03 22.23 0.22 -2.75 16 8 C 0.00 -0.15 9.52 22.35 0.21 0.06 16 9 C -0.69 -26.34 5.88 22.22 0.13 -26.21 16 10 S 2.67 121.81 5.70 -56.49 -0.32 121.49 16 11 O -0.99 -47.64 16.97 -128.00 -2.17 -49.81 16 12 O -1.02 -50.75 17.27 -128.00 -2.21 -52.96 16 13 N -0.98 -49.37 5.75 -54.27 -0.31 -49.69 16 14 C -0.31 -16.02 9.63 84.03 0.81 -15.21 16 15 H 0.11 5.34 7.82 -2.91 -0.02 5.31 16 16 C -0.02 -1.11 5.50 84.86 0.47 -0.64 16 17 N -0.93 -51.96 13.06 21.65 0.28 -51.68 16 18 Si 0.99 40.18 29.55 68.60 2.03 42.21 16 19 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 20 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 22 C 0.00 0.15 9.07 22.58 0.20 0.35 16 23 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 25 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 26 H 0.13 1.03 8.08 -2.39 -0.02 1.02 16 27 H 0.13 0.93 8.09 -2.39 -0.02 0.91 16 28 H 0.19 1.28 7.05 -2.91 -0.02 1.26 16 29 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.15 4.32 7.60 -2.91 -0.02 4.30 16 31 H 0.40 21.43 8.02 -96.74 -0.78 20.65 16 32 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.12 4.90 7.20 -2.91 -0.02 4.88 16 Total: -1.00 -75.93 306.51 0.77 -75.16 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.37 Total: 26.56 kcal Atomic # 6 Polarization: -46.74 SS G_CDS: 3.16 Total: -43.58 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -0.03 Total: -101.37 kcal Atomic # 8 Polarization: -116.04 SS G_CDS: -4.43 Total: -120.47 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: 121.81 SS G_CDS: -0.32 Total: 121.49 kcal Total: -75.93 0.77 -75.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040862565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.782 kcal (2) G-P(sol) polarization free energy of solvation -75.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds