Wall clock time and date at job start Tue Mar 31 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99944 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47073 * 120.86739 * 179.71737 * 13 11 10 15 15 C 1.53674 * 108.30677 * 115.09681 * 14 13 11 16 16 C 1.51396 * 109.05007 * 45.68655 * 15 14 13 17 17 S 1.75907 * 125.06533 * 162.05147 * 16 15 14 18 18 C 1.75715 * 91.11763 * 179.58412 * 17 16 15 19 19 C 1.32930 * 109.58812 * 0.07699 * 18 17 16 20 20 C 1.34653 * 125.09935 * 341.80657 * 16 15 14 21 21 C 1.46973 * 120.87380 * 359.97438 * 13 11 10 22 22 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 24 24 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 25 25 H 1.09003 * 109.61785 * 234.81031 * 14 13 11 26 26 H 1.08997 * 109.62278 * 355.35999 * 14 13 11 27 27 H 1.08998 * 109.64361 * 285.76120 * 15 14 13 28 28 H 1.09002 * 109.52449 * 165.54110 * 15 14 13 29 29 H 1.08000 * 125.20791 * 180.11589 * 18 17 16 30 30 H 1.07994 * 122.17368 * 180.02562 * 19 18 17 31 31 H 1.08996 * 109.79835 * 344.64443 * 21 13 11 32 32 H 1.08997 * 109.79787 * 105.50850 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3491 -7.7282 0.0059 15 6 2.7654 -8.3949 -1.3146 16 6 4.2177 -8.0718 -1.5950 17 16 5.2497 -8.9491 -2.7173 18 6 6.6017 -7.8854 -2.3593 19 6 6.2290 -6.9771 -1.4631 20 6 4.9112 -7.0674 -1.0263 21 6 4.2972 -6.1235 0.0008 22 1 -0.4850 0.8401 -0.0004 23 1 3.1243 -3.7315 -0.8895 24 1 3.1244 -3.7315 0.8905 25 1 2.7858 -8.2694 0.8453 26 1 1.2626 -7.7284 0.0924 27 1 2.1446 -8.0175 -2.1272 28 1 2.6415 -9.4747 -1.2325 29 1 7.5848 -7.9580 -2.8004 30 1 6.9054 -6.2189 -1.0973 31 1 4.5145 -5.0905 -0.2708 32 1 4.7028 -6.3393 0.9892 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041792792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:56 Heat of formation + Delta-G solvation = -21.340019 kcal Electronic energy + Delta-G solvation = -17161.419610 eV Core-core repulsion = 14338.947918 eV Total energy + Delta-G solvation = -2822.471691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26237 -39.23632 -36.40802 -34.57700 -33.67715 -30.75718 -30.34049 -27.69484 -26.67177 -24.74299 -23.33529 -20.75391 -19.67249 -19.22706 -18.39118 -17.36780 -17.28740 -16.87007 -16.68086 -15.95021 -15.73382 -15.40718 -14.78433 -14.49471 -14.33416 -14.17465 -13.78397 -13.53313 -13.39340 -13.16374 -12.86034 -12.75569 -12.63649 -12.49010 -12.22112 -11.72957 -11.69505 -11.12015 -10.96665 -10.27427 -9.84241 -9.49595 -9.25712 -8.67060 -8.33691 -6.12292 0.04774 0.66862 1.06230 1.24938 1.44869 1.45613 1.53481 1.55994 1.70731 2.05006 2.28127 3.00556 3.23289 3.59261 3.72437 3.80943 3.96867 4.17912 4.24539 4.31831 4.40327 4.46084 4.51215 4.59424 4.74787 4.80285 4.95431 5.11947 5.31632 5.42326 5.44110 5.53979 6.20060 6.23036 7.07277 7.08029 8.75358 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.026707 B = 0.003943 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.176041 B = 7100.270211 C = 7848.602442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.150 6.150 10 C -0.125 4.125 11 C 0.538 3.462 12 O -0.562 6.562 13 N -0.610 5.610 14 C 0.115 3.885 15 C -0.060 4.060 16 C -0.188 4.188 17 S 0.100 5.900 18 C -0.211 4.211 19 C -0.132 4.132 20 C -0.133 4.133 21 C 0.168 3.832 22 H 0.271 0.729 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.190 0.810 30 H 0.161 0.839 31 H 0.103 0.897 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.298 -18.231 -2.571 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.077 5.923 10 C -0.276 4.276 11 C 0.326 3.674 12 O -0.440 6.440 13 N -0.343 5.343 14 C -0.008 4.008 15 C -0.099 4.099 16 C -0.305 4.305 17 S 0.366 5.634 18 C -0.346 4.346 19 C -0.162 4.162 20 C -0.146 4.146 21 C 0.044 3.956 22 H 0.080 0.920 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.207 0.793 30 H 0.178 0.822 31 H 0.121 0.879 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.215 -19.716 -3.561 24.565 hybrid contribution 1.619 2.404 0.738 2.991 sum 15.834 -17.312 -2.822 23.630 Atomic orbital electron populations 1.70180 1.08006 1.28677 1.47943 1.26119 0.95934 1.03280 0.93671 0.85014 0.77824 0.75686 0.79542 1.18696 1.20446 1.18503 1.23167 0.95364 0.91896 1.59018 0.89830 1.85582 1.10463 0.99235 1.97034 1.23382 1.03547 0.94261 1.06417 1.20083 0.85906 0.86533 0.74917 1.90676 1.16991 1.85705 1.50599 1.48056 1.06941 1.05901 1.73446 1.21810 1.01054 0.80239 0.97744 1.20712 0.89019 1.02372 0.97830 1.24852 1.00434 1.01464 1.03786 1.84131 1.02912 1.33512 1.42885 1.25699 1.03536 1.00583 1.04815 1.20113 0.95266 1.01557 0.99247 1.19961 0.94828 0.98221 1.01585 1.20822 0.77422 0.99085 0.98273 0.91992 0.87720 0.87019 0.88310 0.89598 0.91187 0.87016 0.79324 0.82197 0.87944 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 2 C 0.01 0.84 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.55 -31.15 9.50 67.96 0.65 -30.51 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 10 C -0.13 -5.03 4.56 71.24 0.32 -4.71 16 11 C 0.54 20.53 7.72 87.66 0.68 21.21 16 12 O -0.56 -26.35 15.30 -3.04 -0.05 -26.39 16 13 N -0.61 -16.93 2.91 -818.97 -2.38 -19.32 16 14 C 0.12 2.65 6.43 86.50 0.56 3.20 16 15 C -0.06 -1.19 6.44 30.30 0.20 -0.99 16 16 C -0.19 -3.86 6.39 25.08 0.16 -3.70 16 17 S 0.10 1.70 23.31 -56.49 -1.32 0.38 16 18 C -0.21 -3.17 11.20 66.65 0.75 -2.42 16 19 C -0.13 -2.18 10.00 21.31 0.21 -1.97 16 20 C -0.13 -2.68 5.86 -19.92 -0.12 -2.80 16 21 C 0.17 3.52 6.51 86.09 0.56 4.08 16 22 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 23 H 0.10 3.88 7.57 -2.39 -0.02 3.87 16 24 H 0.11 3.99 8.10 -2.40 -0.02 3.97 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 2.30 7.02 -2.39 -0.02 2.28 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.10 2.12 6.16 -2.39 -0.01 2.11 16 32 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -75.06 299.95 2.97 -72.09 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.13 Total: 10.51 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 4.43 Total: -17.30 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -2.10 Total: -75.10 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -2.48 Total: -9.18 kcal Total: -75.06 2.97 -72.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041792792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.752 kcal (2) G-P(sol) polarization free energy of solvation -75.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds