Wall clock time and date at job start Tue Mar 31 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48494 * 109.47182 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48505 * 109.47095 * 149.99711 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.39716 * 119.99997 * 180.02562 * 12 11 10 14 14 C 1.38902 * 120.06697 * 359.72502 * 13 12 11 15 15 C 1.38103 * 119.93423 * 179.74628 * 14 13 12 16 16 C 1.38363 * 120.06373 * 0.50683 * 15 14 13 17 17 Br 1.89106 * 119.93581 * 179.74816 * 16 15 14 18 18 C 1.38357 * 120.13104 * 359.76609 * 16 15 14 19 19 C 1.38104 * 120.06492 * 359.97438 * 18 16 15 20 20 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 22 22 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 23 23 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 24 24 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 25 25 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 26 26 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 27 27 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 28 28 H 1.07995 * 120.03454 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.97275 * 180.25766 * 15 14 13 30 30 H 1.08003 * 119.96984 * 179.97438 * 18 16 15 31 31 H 1.07997 * 120.03472 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9660 -7.4180 0.0019 14 6 0.6007 -7.6732 0.0072 15 6 0.1432 -8.9763 0.0020 16 6 1.0435 -10.0270 0.0021 17 35 0.4131 -11.8099 0.0022 18 6 2.4041 -9.7758 0.0026 19 6 2.8674 -8.4748 0.0023 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 2.8717 -3.6045 0.8906 24 1 2.8717 -3.6045 -0.8894 25 1 0.8530 -5.0451 -0.8886 26 1 0.8535 -5.0445 0.8914 27 1 3.3856 -5.9235 0.0021 28 1 -0.1025 -6.8536 0.0117 29 1 -0.9183 -9.1755 0.0019 30 1 3.1045 -10.5979 0.0031 31 1 3.9296 -8.2793 0.0031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042221075.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:59 Heat of formation + Delta-G solvation = 6.633691 kcal Electronic energy + Delta-G solvation = -13654.273763 eV Core-core repulsion = 11173.790839 eV Total energy + Delta-G solvation = -2480.482924 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46960 -36.22469 -33.74252 -32.03045 -31.04507 -30.78114 -28.17915 -26.08156 -23.64653 -22.50359 -21.18327 -20.37701 -17.37415 -16.53089 -15.91258 -15.34444 -14.93348 -14.54770 -14.14003 -13.86217 -13.49562 -13.39642 -12.37400 -12.20538 -11.88544 -11.58777 -11.22125 -11.13125 -10.87243 -10.75055 -10.61607 -10.26110 -9.97453 -9.54977 -9.54453 -9.19725 -9.06380 -8.43137 -7.36234 -6.08018 -4.11088 1.33137 1.35578 1.74392 3.27057 3.33649 3.36272 3.54653 3.72586 4.39725 4.76065 4.88557 5.28156 5.28727 5.36755 5.45870 5.62818 5.64261 5.89960 6.00586 6.06996 6.23609 6.31025 6.49115 6.51486 6.72296 6.89504 7.36009 7.55314 7.67340 7.78456 7.90227 8.31741 8.95327 9.53591 11.03289 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.076523 B = 0.002522 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.813446 B =11097.992405 C =11438.055939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.737 5.737 13 C 0.240 3.760 14 C -0.196 4.196 15 C -0.039 4.039 16 C -0.160 4.160 17 Br -0.074 7.074 18 C -0.041 4.041 19 C -0.201 4.201 20 H 0.262 0.738 21 H 0.018 0.982 22 H 0.019 0.981 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.400 0.600 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -23.327 0.011 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.362 5.362 13 C 0.132 3.868 14 C -0.220 4.220 15 C -0.060 4.060 16 C -0.241 4.241 17 Br 0.011 6.989 18 C -0.062 4.062 19 C -0.224 4.224 20 H 0.071 0.929 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.235 0.765 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.633 -23.668 0.016 23.724 hybrid contribution 0.914 1.465 -0.013 1.727 sum 2.546 -22.202 0.003 22.348 Atomic orbital electron populations 1.69958 1.06070 1.26764 1.50518 1.25025 0.94871 0.99342 0.95179 0.86574 0.79822 0.83348 0.78147 1.20615 1.21150 1.19876 1.21199 0.93019 0.90941 1.51046 0.92660 1.19026 0.93811 0.90920 0.97539 1.21857 0.99810 0.93202 1.00981 1.21702 0.92217 0.85779 1.00941 1.45176 1.09334 1.02269 1.79417 1.18057 0.92926 0.85166 0.90640 1.20723 0.93963 0.96885 1.10384 1.20819 0.99031 0.91048 0.95077 1.21323 0.95424 0.89876 1.17479 1.96607 1.88867 1.15212 1.98238 1.20736 0.93350 0.96530 0.95579 1.20566 0.99045 0.91259 1.11571 0.92880 0.96333 0.96311 0.92711 0.92708 0.92239 0.92246 0.76525 0.85009 0.85414 0.85552 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.83 4.91 -4.04 -0.02 1.81 16 12 N -0.74 -9.86 5.73 -58.62 -0.34 -10.20 16 13 C 0.24 3.12 6.65 -83.77 -0.56 2.57 16 14 C -0.20 -2.53 9.31 -39.39 -0.37 -2.90 16 15 C -0.04 -0.47 9.78 -39.58 -0.39 -0.86 16 16 C -0.16 -1.88 6.23 -39.49 -0.25 -2.12 16 17 Br -0.07 -0.78 33.70 -68.01 -2.29 -3.07 16 18 C -0.04 -0.46 9.78 -39.59 -0.39 -0.85 16 19 C -0.20 -2.30 9.90 -39.38 -0.39 -2.69 16 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 26 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 27 H 0.40 4.77 8.49 -40.82 -0.35 4.43 16 28 H 0.13 1.67 6.73 -52.49 -0.35 1.32 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 288.85 15.07 4.35 4.35 Total: -1.00 -28.78 288.85 -9.63 -38.41 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.03 Total: 0.05 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -3.04 Total: -20.17 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.40 Total: -35.77 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -2.29 Total: -3.07 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.78 -9.63 -38.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221075.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.040 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds