Wall clock time and date at job start Tue Mar 31 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99633 * 2 1 4 4 H 1.48499 * 109.47022 * 269.99849 * 3 2 1 5 5 H 1.48497 * 109.47267 * 30.00545 * 3 2 1 6 6 H 1.48503 * 109.46510 * 150.00412 * 3 2 1 7 7 C 1.37873 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00534 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46656 * 179.97438 * 12 11 10 14 14 C 1.38234 * 119.99168 * 269.72332 * 13 12 11 15 15 C 1.38226 * 120.00840 * 179.76787 * 14 13 12 16 16 C 1.38326 * 119.98912 * 0.51250 * 15 14 13 17 17 Br 1.89099 * 120.01022 * 179.72061 * 16 15 14 18 18 C 1.38324 * 119.97784 * 359.74244 * 16 15 14 19 19 C 1.38221 * 119.99288 * 0.02562 * 18 16 15 20 20 H 0.97001 * 120.00114 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47766 * 59.99216 * 9 7 2 22 22 H 1.09008 * 109.46651 * 299.99865 * 9 7 2 23 23 H 1.09002 * 109.47142 * 59.99917 * 10 9 7 24 24 H 1.09000 * 109.46991 * 299.99661 * 10 9 7 25 25 H 1.00896 * 111.00309 * 56.04370 * 11 10 9 26 26 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 27 27 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 28 28 H 1.07997 * 119.99570 * 0.02562 * 14 13 12 29 29 H 1.07997 * 120.00640 * 180.23158 * 15 14 13 30 30 H 1.08002 * 120.00545 * 179.97438 * 18 16 15 31 31 H 1.07999 * 119.99764 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0759 -0.0049 13 6 1.6472 -7.3604 -0.0047 14 6 1.2921 -7.9531 1.1926 15 6 0.5651 -9.1288 1.1931 16 6 0.2021 -9.7178 -0.0047 17 35 -0.7856 -11.3303 -0.0046 18 6 0.5623 -9.1271 -1.2025 19 6 1.2851 -7.9490 -1.2021 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5564 -0.8918 22 1 0.6241 -2.5574 0.8881 23 1 2.8720 -3.6051 0.8873 24 1 2.8719 -3.6035 -0.8927 25 1 0.8741 -4.9839 -0.7844 26 1 3.0626 -6.0342 -0.8952 27 1 3.0640 -6.0356 0.8847 28 1 1.5791 -7.4953 2.1277 29 1 0.2845 -9.5898 2.1286 30 1 0.2795 -9.5869 -2.1379 31 1 1.5667 -7.4879 -2.1372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042238843.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:12 Heat of formation + Delta-G solvation = 11.913733 kcal Electronic energy + Delta-G solvation = -13670.668664 eV Core-core repulsion = 11190.414700 eV Total energy + Delta-G solvation = -2480.253964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49879 -36.05603 -33.37002 -32.27957 -31.17371 -30.34838 -28.53610 -25.25528 -23.32315 -22.92705 -21.10477 -20.53778 -16.80631 -16.32602 -15.83537 -15.33742 -14.77901 -14.43588 -14.17160 -13.64548 -13.52044 -13.13880 -12.52576 -12.24442 -12.15135 -11.35900 -11.18773 -11.01441 -10.94845 -10.91859 -10.54392 -10.45876 -10.03698 -9.45155 -9.19601 -9.13492 -8.70064 -8.37192 -7.89848 -6.01430 -4.04433 0.96182 1.20447 1.46885 3.30833 3.37153 3.40247 3.48801 4.42516 4.62031 4.70319 4.77362 4.99781 5.18851 5.24598 5.34503 5.52329 5.55927 5.79462 5.86864 6.06551 6.10162 6.27835 6.32147 6.51534 6.70090 6.92814 7.38962 7.68695 7.76969 7.89421 8.05083 8.40553 9.02815 9.59526 11.09946 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.058600 B = 0.002609 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.697225 B =10728.491394 C =10888.884388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.091 3.909 13 C -0.055 4.055 14 C -0.093 4.093 15 C -0.092 4.092 16 C -0.095 4.095 17 Br -0.062 7.062 18 C -0.092 4.092 19 C -0.110 4.110 20 H 0.261 0.739 21 H 0.014 0.986 22 H 0.026 0.974 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.338 0.662 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 -24.364 -0.715 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.316 5.316 12 C -0.038 4.038 13 C -0.056 4.056 14 C -0.112 4.112 15 C -0.112 4.112 16 C -0.174 4.174 17 Br 0.024 6.976 18 C -0.112 4.112 19 C -0.130 4.130 20 H 0.070 0.930 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.078 0.922 24 H 0.035 0.965 25 H 0.155 0.845 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.040 -24.840 -0.022 24.840 hybrid contribution 0.906 1.330 -0.951 1.869 sum 0.866 -23.511 -0.973 23.547 Atomic orbital electron populations 1.69975 1.06041 1.26640 1.50528 1.25008 0.94851 0.99249 0.95266 0.86579 0.79833 0.83423 0.78069 1.20695 1.21166 1.19869 1.21165 0.92984 0.90983 1.51033 0.92732 1.19069 0.94006 0.90358 0.97793 1.22205 0.97059 0.88202 0.98802 1.60670 1.19378 1.01603 1.49993 1.20956 0.93710 0.87801 1.01312 1.20113 0.96812 0.95738 0.92972 1.21104 0.97293 0.94338 0.98481 1.21111 0.97690 0.95763 0.96646 1.21734 1.03972 0.95245 0.96485 1.96685 1.72320 1.29307 1.99335 1.21046 0.97782 0.95686 0.96651 1.21111 0.98425 0.95196 0.98234 0.92951 0.96800 0.95587 0.92176 0.96490 0.84464 0.94598 0.90211 0.84821 0.85134 0.85211 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.65 5.23 -27.89 -0.15 0.51 16 10 C 0.07 1.34 5.62 -3.82 -0.02 1.32 16 11 N -0.69 -11.86 6.49 -115.05 -0.75 -12.61 16 12 C 0.09 1.25 5.81 -4.97 -0.03 1.22 16 13 C -0.06 -0.69 5.39 -104.62 -0.56 -1.25 16 14 C -0.09 -1.09 9.70 -39.59 -0.38 -1.47 16 15 C -0.09 -1.01 9.79 -39.55 -0.39 -1.40 16 16 C -0.09 -1.05 6.22 -39.52 -0.25 -1.30 16 17 Br -0.06 -0.61 33.70 -68.01 -2.29 -2.90 16 18 C -0.09 -0.99 9.79 -39.56 -0.39 -1.38 16 19 C -0.11 -1.24 9.70 -39.59 -0.38 -1.63 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.34 5.74 8.72 -39.29 -0.34 5.40 16 26 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 28 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -29.81 291.91 -9.99 -39.80 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.11 Total: -0.18 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -2.96 Total: -18.91 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.01 Total: -38.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.81 -9.99 -39.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042238843.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.718 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds