Wall clock time and date at job start Tue Mar 31 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99633 * 2 1 4 4 H 1.48499 * 109.47022 * 269.99849 * 3 2 1 5 5 H 1.48497 * 109.47267 * 30.00545 * 3 2 1 6 6 H 1.48503 * 109.46510 * 150.00412 * 3 2 1 7 7 C 1.37873 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00534 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46656 * 179.97438 * 12 11 10 14 14 C 1.38234 * 119.99168 * 269.72332 * 13 12 11 15 15 C 1.38226 * 120.00840 * 179.76787 * 14 13 12 16 16 C 1.38326 * 119.98912 * 0.51250 * 15 14 13 17 17 Br 1.89099 * 120.01022 * 179.72061 * 16 15 14 18 18 C 1.38324 * 119.97784 * 359.74244 * 16 15 14 19 19 C 1.38221 * 119.99288 * 0.02562 * 18 16 15 20 20 H 0.97001 * 120.00114 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47766 * 59.99216 * 9 7 2 22 22 H 1.09008 * 109.46651 * 299.99865 * 9 7 2 23 23 H 1.09002 * 109.47142 * 59.99917 * 10 9 7 24 24 H 1.09000 * 109.46991 * 299.99661 * 10 9 7 25 25 H 1.00896 * 111.00309 * 56.04370 * 11 10 9 26 26 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 27 27 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 28 28 H 1.07997 * 119.99570 * 0.02562 * 14 13 12 29 29 H 1.07997 * 120.00640 * 180.23158 * 15 14 13 30 30 H 1.08002 * 120.00545 * 179.97438 * 18 16 15 31 31 H 1.07999 * 119.99764 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0759 -0.0049 13 6 1.6472 -7.3604 -0.0047 14 6 1.2921 -7.9531 1.1926 15 6 0.5651 -9.1288 1.1931 16 6 0.2021 -9.7178 -0.0047 17 35 -0.7856 -11.3303 -0.0046 18 6 0.5623 -9.1271 -1.2025 19 6 1.2851 -7.9490 -1.2021 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5564 -0.8918 22 1 0.6241 -2.5574 0.8881 23 1 2.8720 -3.6051 0.8873 24 1 2.8719 -3.6035 -0.8927 25 1 0.8741 -4.9839 -0.7844 26 1 3.0626 -6.0342 -0.8952 27 1 3.0640 -6.0356 0.8847 28 1 1.5791 -7.4953 2.1277 29 1 0.2845 -9.5898 2.1286 30 1 0.2795 -9.5869 -2.1379 31 1 1.5667 -7.4879 -2.1372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042238843.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:12 Heat of formation + Delta-G solvation = -5.454666 kcal Electronic energy + Delta-G solvation = -13671.421814 eV Core-core repulsion = 11190.414700 eV Total energy + Delta-G solvation = -2481.007114 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.39224 -37.47684 -35.19075 -33.58166 -32.02192 -31.68210 -29.95369 -26.81162 -24.88658 -23.79089 -22.47933 -21.94801 -18.51135 -17.73410 -16.92864 -16.54110 -16.18585 -15.91367 -15.56191 -14.86502 -14.46950 -14.31616 -13.96018 -13.87452 -13.53013 -12.93575 -12.85206 -12.48261 -12.23487 -12.05896 -11.89447 -11.77362 -11.39797 -11.26209 -11.24559 -10.56134 -9.98697 -9.63707 -9.26801 -8.19925 -6.31581 0.06698 0.35186 0.63265 1.41251 1.42735 1.53897 2.40721 2.58819 3.13671 3.49922 3.77959 3.86726 3.97651 4.24853 4.38989 4.51024 4.55678 4.65556 4.69519 4.80234 5.02228 5.07683 5.21206 5.22503 5.44863 5.59651 5.67317 5.77775 5.83933 6.11983 6.25524 6.49462 6.86192 7.37940 8.92214 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.058600 B = 0.002609 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.697225 B =10728.491394 C =10888.884388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.693 5.693 12 C 0.096 3.904 13 C -0.070 4.070 14 C -0.101 4.101 15 C -0.097 4.097 16 C -0.103 4.103 17 Br -0.051 7.051 18 C -0.095 4.095 19 C -0.113 4.113 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.007 1.007 23 H 0.061 0.939 24 H 0.023 0.977 25 H 0.339 0.661 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -24.852 -0.963 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.324 5.324 12 C -0.032 4.032 13 C -0.070 4.070 14 C -0.120 4.120 15 C -0.116 4.116 16 C -0.183 4.183 17 Br 0.034 6.966 18 C -0.115 4.115 19 C -0.132 4.132 20 H 0.072 0.928 21 H 0.009 0.991 22 H 0.012 0.988 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.156 0.844 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.991 -25.355 -0.271 25.376 hybrid contribution 0.532 1.376 -0.872 1.714 sum 1.523 -23.979 -1.144 24.054 Atomic orbital electron populations 1.70113 1.07864 1.27805 1.51461 1.25991 0.95762 1.03437 0.94657 0.85416 0.78654 0.78280 0.78502 1.19722 1.20830 1.18620 1.21627 0.93616 0.92205 1.50843 0.91958 1.18925 0.94355 0.92360 0.95031 1.21807 0.95573 0.87966 0.99142 1.60555 1.20059 1.01470 1.50298 1.20950 0.93336 0.86885 1.02066 1.20049 0.97746 0.95489 0.93765 1.21247 0.97461 0.94733 0.98604 1.21301 0.97369 0.95548 0.97402 1.21945 1.03888 0.95696 0.96725 1.96694 1.72023 1.28551 1.99331 1.21277 0.97355 0.95493 0.97349 1.21290 0.98148 0.95345 0.98414 0.92758 0.99111 0.98824 0.92002 0.95839 0.84385 0.93432 0.89763 0.84309 0.83677 0.83530 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -30.91 9.11 25.60 0.23 -30.67 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.63 5.23 29.85 0.16 1.79 16 10 C 0.08 3.41 5.62 86.30 0.49 3.90 16 11 N -0.69 -23.68 6.49 -517.91 -3.36 -27.04 16 12 C 0.10 2.50 5.81 85.56 0.50 3.00 16 13 C -0.07 -1.64 5.39 -19.86 -0.11 -1.75 16 14 C -0.10 -2.26 9.70 22.27 0.22 -2.05 16 15 C -0.10 -1.99 9.79 22.29 0.22 -1.77 16 16 C -0.10 -2.12 6.22 22.31 0.14 -1.98 16 17 Br -0.05 -0.94 33.70 -20.37 -0.69 -1.62 16 18 C -0.10 -1.88 9.79 22.29 0.22 -1.66 16 19 C -0.11 -2.36 9.70 22.27 0.22 -2.15 16 20 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 21 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 22 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 23 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.34 11.45 8.72 -89.70 -0.78 10.67 16 26 H 0.05 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.08 2.11 8.08 -2.38 -0.02 2.09 16 28 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 29 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -63.31 291.91 1.33 -61.97 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.34 Total: 10.31 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 2.73 Total: -32.91 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -3.08 Total: -83.80 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 35 Polarization: -0.94 SS G_CDS: -0.69 Total: -1.62 kcal Total: -63.31 1.33 -61.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042238843.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.519 kcal (2) G-P(sol) polarization free energy of solvation -63.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds