Wall clock time and date at job start Tue Mar 31 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46896 * 111.00107 * 84.99918 * 12 2 1 14 14 C 1.50702 * 109.47120 * 179.97438 * 13 12 2 15 15 C 1.38240 * 119.99203 * 269.72331 * 14 13 12 16 16 C 1.38213 * 120.00936 * 179.76661 * 15 14 13 17 17 C 1.38334 * 119.98959 * 0.51157 * 16 15 14 18 18 Br 1.89095 * 120.00759 * 179.72424 * 17 16 15 19 19 C 1.38315 * 119.97763 * 359.74412 * 17 16 15 20 20 C 1.38217 * 119.99394 * 0.02562 * 19 17 16 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.00900 * 111.00037 * 208.95264 * 12 2 1 26 26 H 1.09002 * 109.47179 * 300.00249 * 13 12 2 27 27 H 1.09001 * 109.46976 * 60.00338 * 13 12 2 28 28 H 1.08001 * 119.99570 * 0.02562 * 15 14 13 29 29 H 1.07999 * 120.00652 * 180.24074 * 16 15 14 30 30 H 1.08002 * 120.00656 * 179.97438 * 19 17 16 31 31 H 1.08005 * 119.99995 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5885 -0.5213 -3.5558 15 6 3.9444 -0.5681 -3.8208 16 6 4.4093 -1.2544 -4.9268 17 6 3.5167 -1.8856 -5.7744 18 35 4.1516 -2.8182 -7.2919 19 6 2.1597 -1.8340 -5.5117 20 6 1.6960 -1.1515 -4.4029 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7006 1.1552 3.4844 25 1 2.9173 -1.1204 -1.0289 26 1 1.0870 0.6165 -2.5525 27 1 2.7589 1.0463 -2.1182 28 1 4.6409 -0.0718 -3.1613 29 1 5.4689 -1.2942 -5.1317 30 1 1.4623 -2.3263 -6.1734 31 1 0.6364 -1.1108 -4.1979 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042319807.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:37 Heat of formation + Delta-G solvation = 18.588538 kcal Electronic energy + Delta-G solvation = -14121.233883 eV Core-core repulsion = 11641.269361 eV Total energy + Delta-G solvation = -2479.964522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.31340 -35.97468 -33.27410 -31.84828 -31.01109 -29.94738 -27.81254 -25.37089 -24.11544 -22.75447 -20.93150 -19.81445 -16.97107 -16.17597 -15.50430 -15.10698 -14.79146 -13.99580 -13.81173 -13.47844 -13.23036 -12.93216 -12.47460 -11.91025 -11.49361 -11.17768 -11.12420 -10.88216 -10.75038 -10.68808 -10.35295 -10.31769 -10.16854 -9.98036 -8.97825 -8.90207 -8.55696 -8.46998 -7.35478 -6.06222 -4.13120 1.14291 1.36578 1.58870 3.29223 3.33790 3.36647 3.67481 4.37777 4.79690 4.91863 4.99748 5.24893 5.34563 5.42964 5.54561 5.71536 5.84024 6.08080 6.17190 6.21899 6.30376 6.71920 6.82710 6.89009 7.08646 7.17284 7.43664 7.73711 7.84031 8.22301 8.31364 8.59384 8.96387 9.53078 11.00007 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.044068 B = 0.003239 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.230504 B = 8641.955841 C = 8958.351732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.681 5.681 13 C 0.091 3.909 14 C -0.048 4.048 15 C -0.111 4.111 16 C -0.092 4.092 17 C -0.098 4.098 18 Br -0.066 7.066 19 C -0.093 4.093 20 C -0.095 4.095 21 H 0.032 0.968 22 H 0.081 0.919 23 H 0.004 0.996 24 H 0.262 0.738 25 H 0.332 0.668 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -4.126 -19.101 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.038 4.038 14 C -0.049 4.049 15 C -0.131 4.131 16 C -0.112 4.112 17 C -0.178 4.178 18 Br 0.019 6.981 19 C -0.113 4.113 20 C -0.114 4.114 21 H 0.051 0.949 22 H 0.100 0.900 23 H 0.023 0.977 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.004 -4.586 -19.671 20.809 hybrid contribution 0.919 0.261 1.432 1.722 sum 5.923 -4.325 -18.238 19.658 Atomic orbital electron populations 1.21725 0.97785 0.99412 0.99409 1.19143 0.92702 0.92377 0.85393 0.98025 1.21214 1.31599 1.12666 0.90409 0.92236 1.24910 0.94976 0.94980 0.99047 1.69880 1.36450 1.22892 1.23648 0.86573 0.79067 0.79830 0.82005 1.20304 1.21268 1.20155 1.60815 1.32266 1.32603 1.05601 1.20974 1.00214 0.93419 0.89194 1.20259 0.93072 0.95874 0.95660 1.21130 0.95510 0.99482 0.96956 1.21026 0.99162 0.96803 0.94208 1.21679 0.95797 1.04228 0.96070 1.96656 1.88613 1.75310 1.37522 1.21076 0.93367 0.98974 0.97881 1.21102 1.00429 0.96516 0.93390 0.94910 0.90008 0.97707 0.92811 0.85060 0.90629 0.95009 0.85280 0.85387 0.85340 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.19 37.16 0.34 -2.71 16 2 C 0.21 5.24 2.60 -68.86 -0.18 5.06 16 3 H 0.00 0.06 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.08 8.60 -34.44 -0.30 -14.38 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.13 11.31 55.43 0.63 -24.50 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.68 -14.13 6.29 -109.22 -0.69 -14.82 16 13 C 0.09 1.57 5.61 -4.98 -0.03 1.54 16 14 C -0.05 -0.70 5.39 -104.62 -0.56 -1.27 16 15 C -0.11 -1.48 9.70 -39.59 -0.38 -1.87 16 16 C -0.09 -1.13 9.79 -39.56 -0.39 -1.52 16 17 C -0.10 -1.22 6.22 -39.52 -0.25 -1.47 16 18 Br -0.07 -0.72 33.70 -68.01 -2.29 -3.01 16 19 C -0.09 -1.15 9.79 -39.56 -0.39 -1.54 16 20 C -0.09 -1.29 9.70 -39.59 -0.38 -1.68 16 21 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 2.18 6.06 -51.93 -0.31 1.87 16 23 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.33 6.81 8.22 -39.29 -0.32 6.49 16 26 H 0.08 1.30 7.38 -51.93 -0.38 0.92 16 27 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 28 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 285.25 15.07 4.30 4.30 Total: -1.00 -27.71 285.25 -9.56 -37.26 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.88 Total: 2.95 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.61 Total: -18.21 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.06 Total: -39.32 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -2.29 Total: -3.01 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.71 -9.56 -37.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042319807.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.853 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds