Wall clock time and date at job start Tue Mar 31 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 C 1.46896 * 111.00107 * 84.99918 * 12 2 1 14 14 C 1.50702 * 109.47120 * 179.97438 * 13 12 2 15 15 C 1.38240 * 119.99203 * 269.72331 * 14 13 12 16 16 C 1.38213 * 120.00936 * 179.76661 * 15 14 13 17 17 C 1.38334 * 119.98959 * 0.51157 * 16 15 14 18 18 Br 1.89095 * 120.00759 * 179.72424 * 17 16 15 19 19 C 1.38315 * 119.97763 * 359.74412 * 17 16 15 20 20 C 1.38217 * 119.99394 * 0.02562 * 19 17 16 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.00900 * 111.00037 * 208.95264 * 12 2 1 26 26 H 1.09002 * 109.47179 * 300.00249 * 13 12 2 27 27 H 1.09001 * 109.46976 * 60.00338 * 13 12 2 28 28 H 1.08001 * 119.99570 * 0.02562 * 15 14 13 29 29 H 1.07999 * 120.00652 * 180.24074 * 16 15 14 30 30 H 1.08002 * 120.00656 * 179.97438 * 19 17 16 31 31 H 1.08005 * 119.99995 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5885 -0.5213 -3.5558 15 6 3.9444 -0.5681 -3.8208 16 6 4.4093 -1.2544 -4.9268 17 6 3.5167 -1.8856 -5.7744 18 35 4.1516 -2.8182 -7.2919 19 6 2.1597 -1.8340 -5.5117 20 6 1.6960 -1.1515 -4.4029 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7006 1.1552 3.4844 25 1 2.9173 -1.1204 -1.0289 26 1 1.0870 0.6165 -2.5525 27 1 2.7589 1.0463 -2.1182 28 1 4.6409 -0.0718 -3.1613 29 1 5.4689 -1.2942 -5.1317 30 1 1.4623 -2.3263 -6.1734 31 1 0.6364 -1.1108 -4.1979 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042319807.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:37 Heat of formation + Delta-G solvation = 3.307192 kcal Electronic energy + Delta-G solvation = -14121.896532 eV Core-core repulsion = 11641.269361 eV Total energy + Delta-G solvation = -2480.627171 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37286 -37.67032 -34.92084 -33.28186 -32.00584 -31.28955 -29.34511 -27.36380 -25.58706 -23.75613 -22.14655 -21.65885 -18.69359 -17.49193 -16.93265 -16.54904 -16.09347 -15.53308 -15.48350 -14.76667 -14.42651 -14.09084 -14.02574 -13.52315 -13.13404 -12.85698 -12.72080 -12.46905 -12.23864 -12.17375 -12.04059 -11.77767 -11.62641 -11.24704 -10.90799 -10.56978 -9.96896 -9.58316 -9.06660 -8.13355 -6.27690 0.09969 0.37025 0.64017 1.43376 1.45028 1.52611 2.41460 2.63256 3.15468 3.69237 3.80778 3.97553 4.00781 4.29552 4.41586 4.64806 4.66711 4.79751 4.86768 5.04412 5.08331 5.20209 5.22604 5.25977 5.46772 5.63826 5.66976 5.85450 5.85837 6.22531 6.44255 6.74259 6.97480 7.42816 8.91969 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.044068 B = 0.003239 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.230504 B = 8641.955841 C = 8958.351732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.027 1.027 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.679 5.679 13 C 0.097 3.903 14 C -0.064 4.064 15 C -0.115 4.115 16 C -0.092 4.092 17 C -0.103 4.103 18 Br -0.049 7.049 19 C -0.093 4.093 20 C -0.101 4.101 21 H 0.027 0.973 22 H 0.057 0.943 23 H 0.024 0.976 24 H 0.263 0.737 25 H 0.333 0.667 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.136 0.864 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -5.162 -20.042 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H -0.009 1.009 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.310 5.310 13 C -0.032 4.032 14 C -0.065 4.065 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.183 4.183 18 Br 0.036 6.964 19 C -0.112 4.112 20 C -0.121 4.121 21 H 0.046 0.954 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.150 0.850 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.154 0.846 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.788 -5.628 -20.636 22.159 hybrid contribution 0.702 0.574 1.604 1.842 sum 6.490 -5.054 -19.032 20.734 Atomic orbital electron populations 1.21551 0.97625 0.98882 0.99189 1.18949 0.92832 0.90922 0.86659 1.00924 1.21556 1.31785 1.12830 0.91631 0.92316 1.25705 0.95107 0.95657 1.01976 1.70007 1.37300 1.24062 1.24276 0.85563 0.78763 0.78647 0.78356 1.19534 1.20924 1.19745 1.60707 1.32338 1.32951 1.05010 1.20908 1.00240 0.93109 0.88957 1.20053 0.94006 0.97199 0.95267 1.21240 0.95045 0.99610 0.97527 1.21244 1.00245 0.96078 0.93573 1.21911 0.95969 1.03875 0.96536 1.96678 1.88406 1.74849 1.36427 1.21278 0.93879 0.98491 0.97596 1.21198 1.00579 0.96584 0.93709 0.95392 0.92423 0.95692 0.92788 0.84991 0.90886 0.95289 0.84574 0.83433 0.83437 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.63 9.19 71.98 0.66 -4.97 16 2 C 0.21 10.80 2.60 44.17 0.12 10.91 16 3 H -0.03 -1.48 7.80 -2.38 -0.02 -1.50 16 4 C -0.54 -29.40 8.60 25.60 0.22 -29.18 16 5 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -52.39 11.31 21.45 0.24 -52.15 16 8 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.68 -28.19 6.29 -499.45 -3.14 -31.33 16 13 C 0.10 3.32 5.61 85.56 0.48 3.80 16 14 C -0.06 -1.84 5.39 -19.86 -0.11 -1.95 16 15 C -0.11 -2.90 9.70 22.26 0.22 -2.69 16 16 C -0.09 -2.06 9.79 22.29 0.22 -1.84 16 17 C -0.10 -2.33 6.22 22.31 0.14 -2.19 16 18 Br -0.05 -0.94 33.70 -20.37 -0.69 -1.63 16 19 C -0.09 -2.11 9.79 22.28 0.22 -1.89 16 20 C -0.10 -2.62 9.70 22.27 0.22 -2.41 16 21 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 3.12 6.06 -2.38 -0.01 3.11 16 23 H 0.02 1.08 7.45 -2.38 -0.02 1.06 16 24 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.33 13.63 8.22 -89.69 -0.74 12.89 16 26 H 0.07 2.51 7.38 -2.39 -0.02 2.49 16 27 H 0.03 1.01 8.00 -2.39 -0.02 0.99 16 28 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 29 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 30 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -58.01 285.25 1.66 -56.36 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.39 Total: 14.82 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 2.83 Total: -31.13 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -2.90 Total: -83.48 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 35 Polarization: -0.94 SS G_CDS: -0.69 Total: -1.63 kcal Total: -58.01 1.66 -56.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042319807.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.665 kcal (2) G-P(sol) polarization free energy of solvation -58.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds