Wall clock time and date at job start Tue Mar 31 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 13 13 C 1.46906 * 110.99961 * 275.00030 * 12 2 1 14 14 C 1.50699 * 109.46941 * 180.02562 * 13 12 2 15 15 C 1.38238 * 119.98737 * 269.71940 * 14 13 12 16 16 C 1.38221 * 120.00987 * 179.76618 * 15 14 13 17 17 C 1.38326 * 119.98504 * 0.51899 * 16 15 14 18 18 Br 1.89108 * 120.00900 * 179.72155 * 17 16 15 19 19 C 1.38323 * 119.98610 * 359.73665 * 17 16 15 20 20 C 1.38230 * 119.98412 * 0.02562 * 19 17 16 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 24 24 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 25 25 H 1.00895 * 110.99835 * 151.05029 * 12 2 1 26 26 H 1.08996 * 109.46904 * 300.00505 * 13 12 2 27 27 H 1.08996 * 109.46971 * 60.00210 * 13 12 2 28 28 H 1.07998 * 119.99848 * 0.03053 * 15 14 13 29 29 H 1.07997 * 120.00489 * 180.23506 * 16 15 14 30 30 H 1.07994 * 120.01297 * 179.97438 * 19 17 16 31 31 H 1.07999 * 119.99396 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5885 -0.5217 3.5557 15 6 1.6957 -1.1476 4.4055 16 6 2.1596 -1.8344 5.5116 17 6 3.5168 -1.8862 5.7741 18 35 4.1517 -2.8191 7.2916 19 6 4.4094 -1.2554 4.9264 20 6 3.9448 -0.5729 3.8177 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7095 1.1620 -3.4843 25 1 2.9173 -1.1205 1.0287 26 1 2.7588 1.0461 2.1183 27 1 1.0871 0.6161 2.5526 28 1 0.6358 -1.1036 4.2028 29 1 1.4623 -2.3265 6.1734 30 1 5.4690 -1.2952 5.1311 31 1 4.6416 -0.0800 3.1560 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042319810.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:41 Heat of formation + Delta-G solvation = 18.557450 kcal Electronic energy + Delta-G solvation = -14121.028740 eV Core-core repulsion = 11641.062869 eV Total energy + Delta-G solvation = -2479.965871 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31329 -35.97428 -33.27305 -31.84778 -31.01067 -29.94797 -27.81336 -25.37071 -24.11564 -22.75521 -20.93146 -19.81434 -16.97143 -16.17569 -15.50448 -15.10681 -14.79116 -13.99827 -13.81021 -13.47888 -13.23120 -12.93144 -12.47471 -11.90993 -11.49299 -11.17826 -11.12325 -10.88234 -10.75156 -10.68798 -10.35298 -10.31872 -10.16854 -9.98057 -8.97778 -8.90197 -8.55862 -8.47021 -7.35440 -6.06252 -4.13101 1.14318 1.36513 1.58827 3.29228 3.33792 3.36647 3.67456 4.37778 4.79724 4.91848 4.99731 5.24959 5.34582 5.42944 5.54502 5.71550 5.83962 6.08042 6.17209 6.21880 6.30351 6.71933 6.82751 6.89005 7.08605 7.17250 7.43597 7.73721 7.84037 8.22241 8.31303 8.59402 8.96415 9.53079 11.00011 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.044048 B = 0.003240 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.521047 B = 8640.678534 C = 8958.713065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.681 5.681 13 C 0.091 3.909 14 C -0.048 4.048 15 C -0.095 4.095 16 C -0.093 4.093 17 C -0.098 4.098 18 Br -0.066 7.066 19 C -0.092 4.092 20 C -0.111 4.111 21 H 0.032 0.968 22 H 0.004 0.996 23 H 0.081 0.919 24 H 0.262 0.738 25 H 0.332 0.668 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 -4.131 19.102 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.313 5.313 13 C -0.038 4.038 14 C -0.049 4.049 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.178 4.178 18 Br 0.019 6.981 19 C -0.112 4.112 20 C -0.131 4.131 21 H 0.051 0.949 22 H 0.023 0.977 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.000 -4.591 19.672 20.810 hybrid contribution 0.926 0.267 -1.433 1.727 sum 5.926 -4.325 18.239 19.659 Atomic orbital electron populations 1.21722 0.97785 0.99414 0.99394 1.19142 0.92704 0.92375 0.85396 0.98021 1.21211 1.31670 1.12601 0.90410 0.92239 1.24912 0.94986 0.94972 0.99048 1.69883 1.36514 1.22816 1.23652 0.86570 0.79083 0.79811 0.82007 1.20152 1.21268 1.20308 1.60817 1.32263 1.32605 1.05596 1.20974 1.00215 0.93419 0.89197 1.20255 0.93068 0.95886 0.95651 1.21101 1.00419 0.96506 0.93419 1.21079 0.93361 0.98943 0.97910 1.21681 0.95799 1.04215 0.96075 1.96657 1.88615 1.75300 1.37535 1.21027 0.99163 0.96834 0.94175 1.21132 0.95512 0.99505 0.96927 0.94903 0.97698 0.90038 0.92814 0.85062 0.95006 0.90629 0.84949 0.85338 0.85385 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.19 37.16 0.34 -2.71 16 2 C 0.21 5.24 2.60 -68.86 -0.18 5.06 16 3 H 0.00 0.06 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.09 8.59 -34.44 -0.30 -14.38 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.68 -14.13 6.29 -109.22 -0.69 -14.82 16 13 C 0.09 1.57 5.61 -4.97 -0.03 1.54 16 14 C -0.05 -0.70 5.39 -104.62 -0.56 -1.27 16 15 C -0.10 -1.29 9.70 -39.59 -0.38 -1.68 16 16 C -0.09 -1.15 9.79 -39.56 -0.39 -1.54 16 17 C -0.10 -1.22 6.22 -39.52 -0.25 -1.47 16 18 Br -0.07 -0.72 33.70 -68.01 -2.29 -3.01 16 19 C -0.09 -1.13 9.79 -39.55 -0.39 -1.52 16 20 C -0.11 -1.48 9.70 -39.59 -0.38 -1.87 16 21 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 23 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.33 6.81 8.21 -39.29 -0.32 6.48 16 26 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 27 H 0.08 1.30 7.38 -51.93 -0.38 0.92 16 28 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 285.28 15.07 4.30 4.30 Total: -1.00 -27.71 285.28 -9.56 -37.27 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.88 Total: 2.95 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.61 Total: -18.21 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.06 Total: -39.32 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -2.29 Total: -3.01 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.71 -9.56 -37.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042319810.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.826 kcal (2) G-P(sol) polarization free energy of solvation -27.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds