Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 13 13 C 1.46906 * 110.99961 * 275.00030 * 12 2 1 14 14 C 1.50699 * 109.46941 * 180.02562 * 13 12 2 15 15 C 1.38238 * 119.98737 * 269.71940 * 14 13 12 16 16 C 1.38221 * 120.00987 * 179.76618 * 15 14 13 17 17 C 1.38326 * 119.98504 * 0.51899 * 16 15 14 18 18 Br 1.89108 * 120.00900 * 179.72155 * 17 16 15 19 19 C 1.38323 * 119.98610 * 359.73665 * 17 16 15 20 20 C 1.38230 * 119.98412 * 0.02562 * 19 17 16 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 24 24 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 25 25 H 1.00895 * 110.99835 * 151.05029 * 12 2 1 26 26 H 1.08996 * 109.46904 * 300.00505 * 13 12 2 27 27 H 1.08996 * 109.46971 * 60.00210 * 13 12 2 28 28 H 1.07998 * 119.99848 * 0.03053 * 15 14 13 29 29 H 1.07997 * 120.00489 * 180.23506 * 16 15 14 30 30 H 1.07994 * 120.01297 * 179.97438 * 19 17 16 31 31 H 1.07999 * 119.99396 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5885 -0.5217 3.5557 15 6 1.6957 -1.1476 4.4055 16 6 2.1596 -1.8344 5.5116 17 6 3.5168 -1.8862 5.7741 18 35 4.1517 -2.8191 7.2916 19 6 4.4094 -1.2554 4.9264 20 6 3.9448 -0.5729 3.8177 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7095 1.1620 -3.4843 25 1 2.9173 -1.1205 1.0287 26 1 2.7588 1.0461 2.1183 27 1 1.0871 0.6161 2.5526 28 1 0.6358 -1.1036 4.2028 29 1 1.4623 -2.3265 6.1734 30 1 5.4690 -1.2952 5.1311 31 1 4.6416 -0.0800 3.1560 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042319810.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = 3.271326 kcal Electronic energy + Delta-G solvation = -14121.691596 eV Core-core repulsion = 11641.062869 eV Total energy + Delta-G solvation = -2480.628727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37270 -37.66974 -34.91972 -33.28194 -32.00534 -31.28989 -29.34569 -27.36337 -25.58744 -23.75681 -22.14629 -21.65879 -18.69388 -17.49188 -16.93269 -16.54793 -16.09386 -15.53125 -15.48618 -14.76837 -14.42643 -14.08991 -14.02533 -13.52287 -13.13264 -12.85758 -12.72022 -12.47011 -12.23855 -12.17412 -12.04123 -11.77816 -11.62623 -11.24699 -10.90807 -10.57094 -9.96837 -9.58399 -9.06615 -8.13399 -6.27685 0.10005 0.36972 0.63980 1.43385 1.45023 1.52634 2.41463 2.63242 3.15501 3.69256 3.80794 3.97559 4.00782 4.29493 4.41571 4.64809 4.66734 4.79809 4.86816 5.04406 5.08317 5.20190 5.22592 5.25956 5.46723 5.63838 5.66938 5.85445 5.85834 6.22480 6.44219 6.74257 6.97498 7.42809 8.91962 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.044048 B = 0.003240 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.521047 B = 8640.678534 C = 8958.713065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.027 1.027 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.679 5.679 13 C 0.097 3.903 14 C -0.064 4.064 15 C -0.101 4.101 16 C -0.093 4.093 17 C -0.103 4.103 18 Br -0.049 7.049 19 C -0.092 4.092 20 C -0.115 4.115 21 H 0.027 0.973 22 H 0.024 0.976 23 H 0.057 0.943 24 H 0.263 0.737 25 H 0.333 0.667 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.258 -5.167 20.043 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H -0.009 1.009 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.310 5.310 13 C -0.032 4.032 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.112 4.112 17 C -0.183 4.183 18 Br 0.036 6.964 19 C -0.111 4.111 20 C -0.134 4.134 21 H 0.046 0.954 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.150 0.850 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.784 -5.633 20.637 22.160 hybrid contribution 0.708 0.580 -1.605 1.847 sum 6.492 -5.054 19.032 20.735 Atomic orbital electron populations 1.21548 0.97622 0.98884 0.99174 1.18948 0.92835 0.90918 0.86662 1.00924 1.21554 1.31853 1.12767 0.91632 0.92320 1.25708 0.95124 0.95641 1.01979 1.70010 1.37366 1.23986 1.24280 0.85560 0.78767 0.78641 0.78354 1.19740 1.20924 1.19538 1.60708 1.32336 1.32953 1.05006 1.20908 1.00243 0.93108 0.88959 1.20049 0.93999 0.97213 0.95258 1.21198 1.00573 0.96572 0.93730 1.21281 0.93874 0.98458 0.97627 1.21912 0.95971 1.03863 0.96540 1.96679 1.88409 1.74840 1.36441 1.21244 1.00246 0.96110 0.93538 1.21242 0.95049 0.99631 0.97505 0.95383 0.95680 0.92458 0.92791 0.84992 0.95290 0.90882 0.84548 0.83433 0.83433 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.62 9.19 71.98 0.66 -4.96 16 2 C 0.21 10.80 2.60 44.17 0.11 10.91 16 3 H -0.03 -1.48 7.80 -2.39 -0.02 -1.50 16 4 C -0.54 -29.40 8.59 25.60 0.22 -29.18 16 5 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 6 C 0.01 0.82 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.40 11.32 21.45 0.24 -52.15 16 8 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 N -0.68 -28.19 6.29 -499.46 -3.14 -31.33 16 13 C 0.10 3.32 5.61 85.56 0.48 3.80 16 14 C -0.06 -1.84 5.39 -19.87 -0.11 -1.95 16 15 C -0.10 -2.62 9.70 22.27 0.22 -2.41 16 16 C -0.09 -2.11 9.79 22.29 0.22 -1.89 16 17 C -0.10 -2.33 6.22 22.31 0.14 -2.19 16 18 Br -0.05 -0.95 33.70 -20.37 -0.69 -1.63 16 19 C -0.09 -2.06 9.79 22.29 0.22 -1.84 16 20 C -0.11 -2.91 9.70 22.27 0.22 -2.69 16 21 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.02 1.08 7.45 -2.39 -0.02 1.06 16 23 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 24 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 25 H 0.33 13.63 8.21 -89.70 -0.74 12.89 16 26 H 0.03 1.01 8.00 -2.39 -0.02 0.99 16 27 H 0.07 2.51 7.38 -2.39 -0.02 2.49 16 28 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 29 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 31 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -58.03 285.28 1.66 -56.37 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.39 Total: 14.80 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 2.83 Total: -31.13 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -2.90 Total: -83.48 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 35 Polarization: -0.95 SS G_CDS: -0.69 Total: -1.63 kcal Total: -58.03 1.66 -56.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042319810.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.641 kcal (2) G-P(sol) polarization free energy of solvation -58.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds