Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99727 * 2 1 4 4 H 1.48507 * 109.47363 * 269.99994 * 3 2 1 5 5 H 1.48500 * 109.47146 * 30.00223 * 3 2 1 6 6 H 1.48497 * 109.47284 * 150.00390 * 3 2 1 7 7 C 1.37876 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99798 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.46901 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46991 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99872 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46944 * 180.02562 * 12 11 10 14 14 C 1.38259 * 119.99416 * 270.27876 * 13 12 11 15 15 C 1.38220 * 120.02067 * 180.23549 * 14 13 12 16 16 C 1.38238 * 120.00764 * 359.48336 * 15 14 13 17 17 C 1.38305 * 119.99297 * 0.26296 * 16 15 14 18 18 Br 1.89094 * 120.01387 * 179.97438 * 17 16 15 19 19 C 1.38191 * 119.99507 * 90.00188 * 13 12 11 20 20 H 0.96993 * 120.00451 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.46975 * 59.99610 * 9 7 2 22 22 H 1.09001 * 109.46799 * 299.99584 * 9 7 2 23 23 H 1.08998 * 109.47845 * 59.99990 * 10 9 7 24 24 H 1.09001 * 109.47275 * 299.99564 * 10 9 7 25 25 H 1.00895 * 111.00156 * 303.95272 * 11 10 9 26 26 H 1.09001 * 109.47462 * 60.00293 * 12 11 10 27 27 H 1.08996 * 109.47228 * 299.99980 * 12 11 10 28 28 H 1.07997 * 119.99226 * 359.97215 * 14 13 12 29 29 H 1.08002 * 119.99998 * 179.76945 * 15 14 13 30 30 H 1.08007 * 120.00835 * 180.23480 * 16 15 14 31 31 H 1.08002 * 120.00579 * 0.04011 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0170 -4.0078 -0.0015 13 6 7.5236 -3.9676 -0.0021 14 6 8.2139 -3.9441 -1.1998 15 6 9.5957 -3.9121 -1.2010 16 6 10.2879 -3.8928 -0.0046 17 6 9.5977 -3.9109 1.1938 18 35 10.5439 -3.8853 2.8308 19 6 8.2147 -3.9484 1.1944 20 1 -0.4850 0.8399 -0.0004 21 1 3.8752 -0.6803 0.8888 22 1 3.8745 -0.6800 -0.8912 23 1 3.6579 -3.1505 -0.8907 24 1 3.6586 -3.1500 0.8893 25 1 5.8516 -2.1106 -0.7840 26 1 5.6669 -4.5319 -0.8908 27 1 5.6683 -4.5304 0.8892 28 1 7.6734 -3.9550 -2.1347 29 1 10.1347 -3.8975 -2.1368 30 1 11.3675 -3.8639 -0.0055 31 1 7.6752 -3.9629 2.1300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042418998.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = 15.585412 kcal Electronic energy + Delta-G solvation = -13776.325206 eV Core-core repulsion = 11296.230459 eV Total energy + Delta-G solvation = -2480.094748 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56291 -36.16404 -33.29377 -32.40612 -31.67577 -29.71747 -29.14730 -25.72495 -23.32124 -22.64287 -21.17077 -20.36554 -16.99500 -16.78288 -15.93106 -15.36537 -14.81551 -14.42316 -14.02836 -13.69431 -13.61008 -13.08839 -12.75907 -12.58120 -12.27411 -11.45124 -11.33968 -11.19047 -11.01808 -10.99138 -10.45704 -10.10344 -9.90555 -9.81309 -9.25733 -9.03821 -8.85155 -8.54506 -8.01415 -6.05313 -4.04001 0.92754 1.11797 1.45695 3.31811 3.39623 3.42282 3.45848 4.45837 4.50826 4.61644 4.81701 4.91533 5.11661 5.14642 5.29290 5.30844 5.57906 5.70588 5.80824 6.01749 6.11801 6.14481 6.20711 6.39550 6.63292 6.73219 7.07464 7.34166 7.54695 7.70129 7.85525 8.51562 8.98424 9.57005 11.07976 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.027929 B = 0.003337 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.307413 B = 8387.561337 C = 8802.250533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.689 5.689 12 C 0.094 3.906 13 C -0.068 4.068 14 C -0.100 4.100 15 C -0.115 4.115 16 C -0.097 4.097 17 C -0.091 4.091 18 Br -0.057 7.057 19 C -0.069 4.069 20 H 0.263 0.737 21 H 0.026 0.974 22 H 0.009 0.991 23 H 0.023 0.977 24 H 0.066 0.934 25 H 0.337 0.663 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.555 -10.245 1.212 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.320 5.320 12 C -0.035 4.035 13 C -0.069 4.069 14 C -0.119 4.119 15 C -0.134 4.134 16 C -0.117 4.117 17 C -0.170 4.170 18 Br 0.028 6.972 19 C -0.089 4.089 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.027 0.973 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.154 0.846 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 24.775 -10.053 2.527 26.857 hybrid contribution -0.058 0.665 -1.312 1.472 sum 24.717 -9.388 1.216 26.468 Atomic orbital electron populations 1.69911 1.06329 1.26962 1.51054 1.25003 0.94728 0.99219 0.94430 0.86754 0.80523 0.83434 0.78475 1.20381 1.21390 1.18745 1.21062 0.89332 0.94539 1.51141 0.91090 1.19548 0.96691 0.91739 0.96799 1.21996 0.83559 1.00254 0.99670 1.60654 1.10084 1.11401 1.49853 1.20911 0.88933 0.92057 1.01560 1.19955 0.96091 0.98411 0.92452 1.21250 0.94316 0.98316 0.97991 1.21112 0.94240 1.00417 0.97657 1.21072 1.00087 0.99544 0.91015 1.21781 0.94832 1.08753 0.91636 1.96705 1.75055 1.97758 1.27676 1.21045 0.91620 0.97229 0.99052 0.92699 0.95596 0.97279 0.95846 0.91532 0.84606 0.94312 0.90076 0.85503 0.85233 0.85288 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.44 5.62 -3.83 -0.02 1.42 16 11 N -0.69 -11.29 6.49 -115.06 -0.75 -12.04 16 12 C 0.09 1.25 5.81 -4.97 -0.03 1.22 16 13 C -0.07 -0.81 5.39 -104.63 -0.56 -1.38 16 14 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 15 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 16 C -0.10 -0.96 9.79 -39.56 -0.39 -1.34 16 17 C -0.09 -1.02 6.22 -39.52 -0.25 -1.26 16 18 Br -0.06 -0.60 33.70 -68.01 -2.29 -2.89 16 19 C -0.07 -0.83 9.44 -39.56 -0.37 -1.21 16 20 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 21 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 22 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.34 5.26 8.72 -39.29 -0.34 4.92 16 26 H 0.04 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 28 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 288.31 15.07 4.34 4.34 Total: -1.00 -30.53 288.31 -9.61 -40.15 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.07 Total: -0.44 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.95 Total: -19.18 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.03 Total: -39.23 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.53 -9.61 -40.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042418998.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.732 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds