Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99727 * 2 1 4 4 H 1.48507 * 109.47363 * 269.99994 * 3 2 1 5 5 H 1.48500 * 109.47146 * 30.00223 * 3 2 1 6 6 H 1.48497 * 109.47284 * 150.00390 * 3 2 1 7 7 C 1.37876 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99798 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.46901 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46991 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99872 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46944 * 180.02562 * 12 11 10 14 14 C 1.38259 * 119.99416 * 270.27876 * 13 12 11 15 15 C 1.38220 * 120.02067 * 180.23549 * 14 13 12 16 16 C 1.38238 * 120.00764 * 359.48336 * 15 14 13 17 17 C 1.38305 * 119.99297 * 0.26296 * 16 15 14 18 18 Br 1.89094 * 120.01387 * 179.97438 * 17 16 15 19 19 C 1.38191 * 119.99507 * 90.00188 * 13 12 11 20 20 H 0.96993 * 120.00451 * 0.02562 * 1 2 3 21 21 H 1.08993 * 109.46975 * 59.99610 * 9 7 2 22 22 H 1.09001 * 109.46799 * 299.99584 * 9 7 2 23 23 H 1.08998 * 109.47845 * 59.99990 * 10 9 7 24 24 H 1.09001 * 109.47275 * 299.99564 * 10 9 7 25 25 H 1.00895 * 111.00156 * 303.95272 * 11 10 9 26 26 H 1.09001 * 109.47462 * 60.00293 * 12 11 10 27 27 H 1.08996 * 109.47228 * 299.99980 * 12 11 10 28 28 H 1.07997 * 119.99226 * 359.97215 * 14 13 12 29 29 H 1.08002 * 119.99998 * 179.76945 * 15 14 13 30 30 H 1.08007 * 120.00835 * 180.23480 * 16 15 14 31 31 H 1.08002 * 120.00579 * 0.04011 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0170 -4.0078 -0.0015 13 6 7.5236 -3.9676 -0.0021 14 6 8.2139 -3.9441 -1.1998 15 6 9.5957 -3.9121 -1.2010 16 6 10.2879 -3.8928 -0.0046 17 6 9.5977 -3.9109 1.1938 18 35 10.5439 -3.8853 2.8308 19 6 8.2147 -3.9484 1.1944 20 1 -0.4850 0.8399 -0.0004 21 1 3.8752 -0.6803 0.8888 22 1 3.8745 -0.6800 -0.8912 23 1 3.6579 -3.1505 -0.8907 24 1 3.6586 -3.1500 0.8893 25 1 5.8516 -2.1106 -0.7840 26 1 5.6669 -4.5319 -0.8908 27 1 5.6683 -4.5304 0.8892 28 1 7.6734 -3.9550 -2.1347 29 1 10.1347 -3.8975 -2.1368 30 1 11.3675 -3.8639 -0.0055 31 1 7.6752 -3.9629 2.1300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042418998.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = -3.206698 kcal Electronic energy + Delta-G solvation = -13777.140094 eV Core-core repulsion = 11296.230459 eV Total energy + Delta-G solvation = -2480.909635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39348 -37.52353 -35.12818 -33.54507 -32.84169 -31.12899 -30.12051 -27.14530 -24.89224 -23.43368 -22.37078 -21.90088 -18.95960 -17.83136 -17.00869 -16.43700 -16.17476 -15.87913 -15.43642 -15.05038 -14.54811 -14.44232 -14.04741 -13.99404 -13.61469 -13.05948 -12.89216 -12.29886 -12.09985 -11.90315 -11.84706 -11.74672 -11.61390 -11.42808 -11.23943 -10.76920 -9.89114 -9.68387 -9.31567 -8.30069 -6.34692 0.12258 0.30859 0.64898 1.36534 1.39585 1.52400 2.36849 2.59616 3.05688 3.42650 3.73681 3.91584 4.11679 4.24200 4.32235 4.42501 4.50355 4.55343 4.68760 4.84457 4.95667 4.97390 5.22755 5.27914 5.36605 5.47758 5.54206 5.63486 5.85141 6.08881 6.24704 6.49595 6.74007 7.30469 8.86595 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.027929 B = 0.003337 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.307413 B = 8387.561337 C = 8802.250533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.250 1.250 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.005 4.005 10 C 0.087 3.913 11 N -0.691 5.691 12 C 0.098 3.902 13 C -0.081 4.081 14 C -0.101 4.101 15 C -0.110 4.110 16 C -0.097 4.097 17 C -0.103 4.103 18 Br -0.056 7.056 19 C -0.084 4.084 20 H 0.267 0.733 21 H 0.021 0.979 22 H 0.019 0.981 23 H 0.022 0.978 24 H 0.057 0.943 25 H 0.343 0.657 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.160 0.840 30 H 0.149 0.851 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.147 -9.700 0.263 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.573 4.573 8 H 0.052 0.948 9 C -0.043 4.043 10 C -0.042 4.042 11 N -0.322 5.322 12 C -0.031 4.031 13 C -0.082 4.082 14 C -0.120 4.120 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.183 4.183 18 Br 0.030 6.970 19 C -0.105 4.105 20 H 0.076 0.924 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.161 0.839 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.161 0.839 29 H 0.178 0.822 30 H 0.167 0.833 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 27.390 -9.529 1.576 29.043 hybrid contribution -0.856 0.395 -1.018 1.387 sum 26.535 -9.135 0.557 28.068 Atomic orbital electron populations 1.70060 1.08292 1.28242 1.52541 1.25989 0.95600 1.03522 0.93989 0.85616 0.79375 0.78133 0.79255 1.18926 1.21013 1.17329 1.21417 0.91938 0.93252 1.50666 0.94844 1.19437 0.93531 0.94545 0.96766 1.21646 0.85889 0.97389 0.99262 1.60528 1.07643 1.13694 1.50382 1.20891 0.90036 0.90182 1.01943 1.19841 0.95112 1.00068 0.93217 1.21487 0.95061 0.97561 0.97912 1.21467 0.93877 0.98838 0.98688 1.21397 1.01204 0.98378 0.90670 1.21915 0.94659 1.09282 0.92404 1.96699 1.74759 1.97776 1.27812 1.21061 0.92249 0.98226 0.98936 0.92424 0.96109 0.96238 0.95938 0.92457 0.83862 0.93165 0.90430 0.83932 0.82201 0.83343 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 2 C 0.01 0.35 5.47 84.65 0.46 0.81 16 3 Si 0.95 44.76 27.47 68.60 1.88 46.64 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 7 C -0.53 -31.05 9.66 25.60 0.25 -30.80 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C 0.00 -0.23 4.30 29.85 0.13 -0.11 16 10 C 0.09 3.39 5.62 86.30 0.49 3.87 16 11 N -0.69 -21.70 6.49 -517.93 -3.36 -25.06 16 12 C 0.10 2.47 5.81 85.56 0.50 2.96 16 13 C -0.08 -1.81 5.39 -19.87 -0.11 -1.92 16 14 C -0.10 -1.82 9.70 22.27 0.22 -1.61 16 15 C -0.11 -1.66 10.05 22.27 0.22 -1.44 16 16 C -0.10 -1.63 9.79 22.29 0.22 -1.42 16 17 C -0.10 -2.15 6.22 22.31 0.14 -2.01 16 18 Br -0.06 -1.10 33.70 -20.37 -0.69 -1.78 16 19 C -0.08 -1.95 9.44 22.29 0.21 -1.74 16 20 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 21 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 22 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 23 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.34 10.01 8.72 -89.70 -0.78 9.23 16 26 H 0.05 1.16 8.09 -2.39 -0.02 1.14 16 27 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 28 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -65.75 288.31 1.14 -64.61 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.28 Total: 8.66 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 2.72 Total: -33.39 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -3.06 Total: -84.73 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -0.69 Total: -1.78 kcal Total: -65.75 1.14 -64.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042418998.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.400 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds