Wall clock time and date at job start Tue Mar 31 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47111 * 2 1 4 4 C 1.50690 * 109.47159 * 120.00368 * 2 1 3 5 5 H 1.07998 * 120.00283 * 120.00050 * 4 2 1 6 6 C 1.37875 * 120.00139 * 299.99664 * 4 2 1 7 7 N 1.31513 * 120.00121 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00326 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46855 * 90.00278 * 8 6 4 10 10 H 1.48492 * 109.47266 * 210.00254 * 8 6 4 11 11 H 1.48498 * 109.47032 * 330.00299 * 8 6 4 12 12 N 1.46901 * 109.46940 * 240.00514 * 2 1 3 13 13 C 1.46898 * 111.00322 * 84.99820 * 12 2 1 14 14 C 1.50700 * 109.47294 * 179.97438 * 13 12 2 15 15 C 1.38230 * 120.00969 * 259.98071 * 14 13 12 16 16 C 1.38224 * 120.01497 * 179.97438 * 15 14 13 17 17 C 1.38265 * 120.01535 * 359.97438 * 16 15 14 18 18 C 1.38194 * 120.01118 * 0.02562 * 17 16 15 19 19 C 1.38305 * 120.00031 * 79.99902 * 14 13 12 20 20 Br 1.89098 * 120.01210 * 359.97438 * 19 14 13 21 21 H 1.09000 * 109.47173 * 299.99718 * 1 2 3 22 22 H 1.09006 * 109.47235 * 59.99698 * 1 2 3 23 23 H 1.09005 * 109.46897 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00828 * 179.97438 * 7 6 4 25 25 H 1.00908 * 111.00148 * 321.04016 * 12 2 1 26 26 H 1.08999 * 109.47253 * 60.00166 * 13 12 2 27 27 H 1.08997 * 109.47337 * 299.99953 * 13 12 2 28 28 H 1.08002 * 119.99697 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.98995 * 180.27550 * 16 15 14 30 30 H 1.08000 * 119.99335 * 179.97438 * 17 16 15 31 31 H 1.08001 * 120.00139 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2303 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5461 4.4122 10 1 1.3432 -0.9495 5.1119 11 1 2.4858 -2.5664 3.7118 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5884 -0.5213 -3.5558 15 6 3.9122 -0.4037 -3.9360 16 6 4.3765 -1.0865 -5.0445 17 6 3.5173 -1.8879 -5.7732 18 6 2.1937 -2.0062 -5.3939 19 6 1.7282 -1.3218 -4.2853 20 35 -0.0828 -1.4834 -3.7657 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7082 1.1608 3.4844 25 1 1.4495 -1.4979 -1.4102 26 1 2.7588 1.0463 -2.1183 27 1 1.0870 0.6164 -2.5526 28 1 4.5841 0.2213 -3.3663 29 1 5.4119 -0.9977 -5.3385 30 1 3.8804 -2.4209 -6.6395 31 1 1.5227 -2.6326 -5.9630 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042419368.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:44 Heat of formation + Delta-G solvation = 23.369023 kcal Electronic energy + Delta-G solvation = -14480.256787 eV Core-core repulsion = 12000.499562 eV Total energy + Delta-G solvation = -2479.757225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.31103 -35.97811 -33.06476 -32.08061 -31.12726 -29.22062 -27.91460 -25.14994 -24.31688 -22.40476 -20.96145 -20.12756 -16.86124 -16.10070 -15.48904 -15.02556 -14.70752 -14.25697 -13.60481 -13.43115 -12.92137 -12.76840 -12.48248 -11.64718 -11.60986 -11.16246 -11.04784 -10.89079 -10.75502 -10.70673 -10.44314 -10.16805 -9.97322 -9.76108 -8.98199 -8.80138 -8.54128 -8.32307 -7.20324 -5.94874 -3.97933 1.18131 1.37346 1.80050 3.35272 3.41207 3.45860 3.69289 4.47611 4.82847 4.89657 5.00763 5.33308 5.36671 5.42797 5.61582 5.68686 5.92495 6.00804 6.24813 6.25607 6.42952 6.64008 6.76075 6.88871 6.92733 7.15438 7.39057 7.79086 7.91755 8.30191 8.56344 8.64226 9.09145 9.67114 11.12098 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.024968 B = 0.005675 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.177286 B = 4932.710126 C = 5635.993603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.675 5.675 13 C 0.084 3.916 14 C -0.036 4.036 15 C -0.099 4.099 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.094 4.094 19 C -0.090 4.090 20 Br -0.050 7.050 21 H 0.087 0.913 22 H 0.007 0.993 23 H 0.027 0.973 24 H 0.259 0.741 25 H 0.329 0.671 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 -3.608 -17.317 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.105 3.895 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.306 5.306 13 C -0.045 4.045 14 C -0.039 4.039 15 C -0.119 4.119 16 C -0.125 4.125 17 C -0.146 4.146 18 C -0.114 4.114 19 C -0.170 4.170 20 Br 0.036 6.964 21 H 0.106 0.894 22 H 0.026 0.974 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.146 0.854 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.034 -3.463 -16.786 17.171 hybrid contribution -0.291 -0.318 0.534 0.687 sum 0.743 -3.781 -16.252 16.703 Atomic orbital electron populations 1.22396 1.00528 0.99221 1.00431 1.19184 0.89771 0.94359 0.86215 0.94876 1.21148 1.30116 1.12410 0.89559 0.91978 1.24938 0.95355 0.95234 0.98974 1.69885 1.37308 1.23284 1.23275 0.86515 0.78413 0.80060 0.82491 1.20790 1.21443 1.19953 1.60962 1.58323 1.08788 1.02479 1.21050 0.99407 0.95452 0.88608 1.20043 0.93234 0.95138 0.95451 1.21109 0.94484 0.99783 0.96490 1.21260 0.99736 0.96365 0.95161 1.21062 0.93138 0.99911 1.00480 1.21035 0.96267 0.98621 0.95464 1.21806 0.91734 1.03724 0.99774 1.96718 1.10585 1.97326 1.91755 0.89393 0.97444 0.95398 0.93115 0.85408 0.90489 0.94164 0.85004 0.85675 0.85630 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.94 37.16 0.33 -3.74 16 2 C 0.21 5.40 2.57 -68.87 -0.18 5.22 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.84 8.84 -34.45 -0.30 -14.14 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -14.75 6.22 -109.23 -0.68 -15.42 16 13 C 0.08 1.55 4.99 -4.98 -0.02 1.53 16 14 C -0.04 -0.58 5.40 -104.60 -0.56 -1.14 16 15 C -0.10 -1.37 9.67 -39.59 -0.38 -1.75 16 16 C -0.11 -1.22 10.05 -39.58 -0.40 -1.62 16 17 C -0.13 -1.39 10.05 -39.59 -0.40 -1.78 16 18 C -0.09 -1.17 9.79 -39.56 -0.39 -1.55 16 19 C -0.09 -1.34 6.22 -39.52 -0.25 -1.59 16 20 Br -0.05 -0.74 31.02 -68.01 -2.11 -2.85 16 21 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 22 H 0.01 0.15 7.45 -51.93 -0.39 -0.24 16 23 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 25 H 0.33 7.07 7.42 -39.29 -0.29 6.78 16 26 H 0.08 1.41 7.92 -51.93 -0.41 0.99 16 27 H 0.04 0.76 6.44 -51.93 -0.33 0.42 16 28 H 0.13 1.68 8.04 -52.49 -0.42 1.26 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 280.79 15.07 4.23 4.23 Total: -1.00 -29.06 280.79 -9.40 -38.46 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.80 Total: 3.23 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -2.64 Total: -19.12 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.05 Total: -40.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.11 Total: -2.85 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.06 -9.40 -38.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042419368.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.825 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds