Wall clock time and date at job start Tue Mar 31 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47111 * 2 1 4 4 C 1.50690 * 109.47159 * 120.00368 * 2 1 3 5 5 H 1.07998 * 120.00283 * 120.00050 * 4 2 1 6 6 C 1.37875 * 120.00139 * 299.99664 * 4 2 1 7 7 N 1.31513 * 120.00121 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00326 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46855 * 90.00278 * 8 6 4 10 10 H 1.48492 * 109.47266 * 210.00254 * 8 6 4 11 11 H 1.48498 * 109.47032 * 330.00299 * 8 6 4 12 12 N 1.46901 * 109.46940 * 240.00514 * 2 1 3 13 13 C 1.46898 * 111.00322 * 84.99820 * 12 2 1 14 14 C 1.50700 * 109.47294 * 179.97438 * 13 12 2 15 15 C 1.38230 * 120.00969 * 259.98071 * 14 13 12 16 16 C 1.38224 * 120.01497 * 179.97438 * 15 14 13 17 17 C 1.38265 * 120.01535 * 359.97438 * 16 15 14 18 18 C 1.38194 * 120.01118 * 0.02562 * 17 16 15 19 19 C 1.38305 * 120.00031 * 79.99902 * 14 13 12 20 20 Br 1.89098 * 120.01210 * 359.97438 * 19 14 13 21 21 H 1.09000 * 109.47173 * 299.99718 * 1 2 3 22 22 H 1.09006 * 109.47235 * 59.99698 * 1 2 3 23 23 H 1.09005 * 109.46897 * 179.97438 * 1 2 3 24 24 H 0.97000 * 120.00828 * 179.97438 * 7 6 4 25 25 H 1.00908 * 111.00148 * 321.04016 * 12 2 1 26 26 H 1.08999 * 109.47253 * 60.00166 * 13 12 2 27 27 H 1.08997 * 109.47337 * 299.99953 * 13 12 2 28 28 H 1.08002 * 119.99697 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.98995 * 180.27550 * 16 15 14 30 30 H 1.08000 * 119.99335 * 179.97438 * 17 16 15 31 31 H 1.08001 * 120.00139 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2303 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5461 4.4122 10 1 1.3432 -0.9495 5.1119 11 1 2.4858 -2.5664 3.7118 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5884 -0.5213 -3.5558 15 6 3.9122 -0.4037 -3.9360 16 6 4.3765 -1.0865 -5.0445 17 6 3.5173 -1.8879 -5.7732 18 6 2.1937 -2.0062 -5.3939 19 6 1.7282 -1.3218 -4.2853 20 35 -0.0828 -1.4834 -3.7657 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7082 1.1608 3.4844 25 1 1.4495 -1.4979 -1.4102 26 1 2.7588 1.0463 -2.1183 27 1 1.0870 0.6164 -2.5526 28 1 4.5841 0.2213 -3.3663 29 1 5.4119 -0.9977 -5.3385 30 1 3.8804 -2.4209 -6.6395 31 1 1.5227 -2.6326 -5.9630 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042419368.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:43 Heat of formation + Delta-G solvation = 6.367950 kcal Electronic energy + Delta-G solvation = -14480.994009 eV Core-core repulsion = 12000.499562 eV Total energy + Delta-G solvation = -2480.494447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37322 -37.72742 -34.83362 -33.24452 -32.60542 -30.38110 -29.51004 -27.25014 -25.80768 -23.42315 -22.24418 -21.96801 -18.52559 -17.52464 -16.77336 -16.66413 -16.09453 -15.81024 -15.16511 -14.63946 -14.34168 -14.13372 -13.89847 -13.53574 -13.19425 -12.86637 -12.74129 -12.50220 -12.22408 -12.14848 -12.00163 -11.87731 -11.75496 -11.13711 -10.97620 -10.47446 -9.84367 -9.60966 -8.97842 -8.08748 -6.20090 0.17226 0.36938 0.70818 1.43670 1.43840 1.55098 2.44537 2.69718 3.19355 3.67747 3.83384 3.98773 4.11546 4.36860 4.44758 4.59727 4.67372 4.72961 4.85895 4.90488 5.03379 5.10806 5.29581 5.39461 5.47625 5.56095 5.69189 5.80796 5.94018 6.26355 6.62340 6.76866 6.93379 7.49552 8.96793 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.024968 B = 0.005675 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.177286 B = 4932.710126 C = 5635.993603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.217 3.783 3 H 0.004 0.996 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.677 5.677 13 C 0.090 3.910 14 C -0.063 4.063 15 C -0.111 4.111 16 C -0.100 4.100 17 C -0.114 4.114 18 C -0.097 4.097 19 C -0.105 4.105 20 Br -0.063 7.063 21 H 0.061 0.939 22 H 0.023 0.977 23 H 0.027 0.973 24 H 0.261 0.739 25 H 0.330 0.670 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.134 0.866 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -4.857 -18.744 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.109 3.891 3 H 0.022 0.978 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.307 5.307 13 C -0.039 4.039 14 C -0.066 4.066 15 C -0.131 4.131 16 C -0.118 4.118 17 C -0.133 4.133 18 C -0.117 4.117 19 C -0.184 4.184 20 Br 0.022 6.978 21 H 0.080 0.920 22 H 0.042 0.958 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.148 0.852 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.152 0.848 29 H 0.176 0.824 30 H 0.182 0.818 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.287 -4.714 -18.233 18.971 hybrid contribution -0.625 0.076 0.863 1.068 sum 1.662 -4.638 -17.370 18.055 Atomic orbital electron populations 1.22174 0.99961 0.98932 0.99867 1.18943 0.90061 0.92775 0.87313 0.97775 1.21421 1.30476 1.12468 0.91026 0.92864 1.25706 0.95420 0.95886 1.01823 1.70008 1.37923 1.24294 1.23993 0.85512 0.77994 0.79000 0.78825 1.20183 1.20860 1.19499 1.60818 1.57875 1.09220 1.02795 1.20953 0.99108 0.95100 0.88725 1.19839 0.94617 0.96863 0.95258 1.21280 0.93649 1.00453 0.97683 1.21645 1.01450 0.94980 0.93729 1.21546 0.92145 0.98742 1.00872 1.21363 0.97503 0.98195 0.94613 1.21919 0.91054 1.04575 1.00885 1.96693 1.11674 1.97359 1.92036 0.91972 0.95816 0.95390 0.92978 0.85222 0.91160 0.94832 0.84803 0.82350 0.81799 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.50 8.94 71.98 0.64 -6.86 16 2 C 0.22 11.37 2.57 44.17 0.11 11.48 16 3 H 0.00 0.25 7.80 -2.39 -0.02 0.23 16 4 C -0.52 -29.38 8.84 25.60 0.23 -29.15 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -53.91 11.32 21.45 0.24 -53.67 16 8 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 12 N -0.68 -30.13 6.22 -499.49 -3.11 -33.24 16 13 C 0.09 3.40 4.99 85.56 0.43 3.83 16 14 C -0.06 -1.99 5.40 -19.85 -0.11 -2.09 16 15 C -0.11 -2.90 9.67 22.26 0.22 -2.69 16 16 C -0.10 -1.92 10.05 22.27 0.22 -1.70 16 17 C -0.11 -2.02 10.05 22.27 0.22 -1.80 16 18 C -0.10 -2.14 9.79 22.29 0.22 -1.92 16 19 C -0.10 -2.99 6.22 22.31 0.14 -2.85 16 20 Br -0.06 -1.88 31.02 -20.37 -0.63 -2.51 16 21 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 22 H 0.02 1.06 7.45 -2.38 -0.02 1.04 16 23 H 0.03 1.34 8.13 -2.38 -0.02 1.32 16 24 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 25 H 0.33 14.41 7.42 -89.69 -0.67 13.74 16 26 H 0.07 2.67 7.92 -2.39 -0.02 2.65 16 27 H 0.03 1.29 6.44 -2.39 -0.02 1.28 16 28 H 0.13 3.31 8.04 -2.91 -0.02 3.29 16 29 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 30 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -62.80 280.79 1.77 -61.03 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.46 Total: 14.41 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 2.77 Total: -32.75 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.86 Total: -86.90 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 35 Polarization: -1.88 SS G_CDS: -0.63 Total: -2.51 kcal Total: -62.80 1.77 -61.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042419368.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.402 kcal (2) G-P(sol) polarization free energy of solvation -62.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds