Wall clock time and date at job start Tue Mar 31 2020 05:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99724 * 2 1 4 4 H 1.48500 * 109.47115 * 270.00317 * 3 2 1 5 5 H 1.48496 * 109.47132 * 29.99876 * 3 2 1 6 6 H 1.48490 * 109.47224 * 150.00202 * 3 2 1 7 7 C 1.37877 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00082 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46979 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.46899 * 110.99989 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47470 * 179.97438 * 12 11 10 14 14 C 1.38242 * 120.00070 * 104.99822 * 13 12 11 15 15 C 1.38224 * 120.00951 * 179.70212 * 14 13 12 16 16 C 1.38264 * 120.01600 * 0.28256 * 15 14 13 17 17 C 1.38198 * 120.01410 * 0.02562 * 16 15 14 18 18 C 1.38299 * 120.00769 * 285.26009 * 13 12 11 19 19 Br 1.89103 * 120.01247 * 0.04165 * 18 13 12 20 20 H 0.96992 * 120.00328 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47315 * 60.00524 * 9 7 2 22 22 H 1.08999 * 109.47486 * 300.00127 * 9 7 2 23 23 H 1.09004 * 109.46499 * 60.00233 * 10 9 7 24 24 H 1.08999 * 109.47285 * 300.00458 * 10 9 7 25 25 H 1.00906 * 110.99898 * 56.05643 * 11 10 9 26 26 H 1.09001 * 109.46772 * 60.00489 * 12 11 10 27 27 H 1.09000 * 109.47321 * 300.00899 * 12 11 10 28 28 H 1.08002 * 119.99955 * 359.97438 * 14 13 12 29 29 H 1.07991 * 119.99277 * 180.25949 * 15 14 13 30 30 H 1.08005 * 119.99203 * 179.97438 * 16 15 14 31 31 H 1.08001 * 120.00771 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6621 -0.0018 11 7 1.5110 -4.9342 -0.0012 12 6 2.4355 -6.0758 -0.0030 13 6 1.6476 -7.3604 -0.0017 14 6 1.5481 -8.1115 -1.1580 15 6 0.8306 -9.2929 -1.1554 16 6 0.2072 -9.7210 0.0021 17 6 0.3007 -8.9675 1.1569 18 6 1.0194 -7.7853 1.1548 19 35 1.1479 -6.7540 2.7346 20 1 -0.4850 0.8399 -0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8896 23 1 2.8728 -3.6046 0.8878 24 1 2.8715 -3.6039 -0.8922 25 1 0.8738 -4.9843 -0.7820 26 1 3.0647 -6.0352 0.8861 27 1 3.0623 -6.0344 -0.8938 28 1 2.0348 -7.7775 -2.0624 29 1 0.7566 -9.8816 -2.0577 30 1 -0.3537 -10.6439 0.0036 31 1 -0.1859 -9.3022 2.0611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042419400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:15 Heat of formation + Delta-G solvation = 16.263043 kcal Electronic energy + Delta-G solvation = -13994.322736 eV Core-core repulsion = 11514.257372 eV Total energy + Delta-G solvation = -2480.065363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.44987 -35.94066 -33.20436 -32.21217 -31.54313 -29.37330 -28.66026 -25.41474 -23.34312 -22.50841 -21.10789 -20.47038 -16.79281 -16.27376 -15.86574 -15.27058 -14.59843 -14.36017 -14.19376 -13.52818 -13.47165 -12.90915 -12.43863 -12.15773 -12.06444 -11.30553 -11.14756 -10.97417 -10.90588 -10.69196 -10.51734 -9.95879 -9.82959 -9.39988 -9.15012 -8.93391 -8.60102 -8.32093 -7.76117 -5.96615 -3.99085 1.07094 1.19641 1.86655 3.33795 3.40027 3.43454 3.53869 4.46298 4.63309 4.73463 4.82596 5.05929 5.17470 5.32512 5.39333 5.52196 5.63589 5.76961 5.95497 6.13622 6.28282 6.32478 6.38099 6.47973 6.73032 7.01851 7.48720 7.75923 7.85632 7.98371 8.12751 8.46907 9.08387 9.64458 11.14806 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.004385 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.498488 B = 6384.175685 C = 6969.869299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.069 3.931 11 N -0.677 5.677 12 C 0.089 3.911 13 C -0.051 4.051 14 C -0.112 4.112 15 C -0.110 4.110 16 C -0.121 4.121 17 C -0.097 4.097 18 C -0.068 4.068 19 Br -0.033 7.033 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.026 0.974 23 H 0.059 0.941 24 H 0.014 0.986 25 H 0.336 0.664 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -21.101 1.488 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.059 4.059 11 N -0.307 5.307 12 C -0.040 4.040 13 C -0.054 4.054 14 C -0.131 4.131 15 C -0.129 4.129 16 C -0.140 4.140 17 C -0.117 4.117 18 C -0.148 4.148 19 Br 0.053 6.947 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.045 0.955 23 H 0.078 0.922 24 H 0.032 0.968 25 H 0.153 0.847 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.649 -20.570 2.791 20.824 hybrid contribution 0.672 0.718 -1.342 1.664 sum 2.321 -19.852 1.449 20.040 Atomic orbital electron populations 1.69974 1.06020 1.26534 1.50706 1.24994 0.94819 0.99160 0.95349 0.86601 0.79861 0.83549 0.78023 1.20741 1.21213 1.19890 1.21177 0.92962 0.91037 1.50788 0.92794 1.19053 0.93998 0.90285 0.97753 1.22158 0.96976 0.88173 0.98612 1.60617 1.19125 1.01302 1.49684 1.20992 0.93895 0.87730 1.01404 1.19914 0.97014 0.96425 0.92034 1.21118 0.99612 0.94974 0.97395 1.21209 0.97065 0.96330 0.98251 1.21113 1.00210 1.00006 0.92654 1.21131 0.98116 0.93395 0.99088 1.21788 1.02829 0.96493 0.93730 1.96763 1.97365 1.71171 1.29354 0.93027 0.96903 0.95518 0.92226 0.96750 0.84705 0.89747 0.94721 0.85454 0.85685 0.85521 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.70 5.23 -27.88 -0.15 0.55 16 10 C 0.07 1.45 5.62 -3.82 -0.02 1.43 16 11 N -0.68 -12.19 6.22 -115.06 -0.72 -12.91 16 12 C 0.09 1.33 5.08 -4.98 -0.03 1.30 16 13 C -0.05 -0.70 5.39 -104.60 -0.56 -1.26 16 14 C -0.11 -1.27 9.67 -39.59 -0.38 -1.65 16 15 C -0.11 -1.07 10.05 -39.58 -0.40 -1.47 16 16 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 17 C -0.10 -1.11 9.79 -39.55 -0.39 -1.49 16 18 C -0.07 -0.93 6.22 -39.52 -0.25 -1.17 16 19 Br -0.03 -0.48 31.92 -68.01 -2.17 -2.65 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.34 5.96 8.72 -39.29 -0.34 5.62 16 26 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 27 H 0.03 0.48 7.95 -51.93 -0.41 0.07 16 28 H 0.13 1.24 8.00 -52.49 -0.42 0.82 16 29 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 30 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 288.84 15.07 4.35 4.35 Total: -1.00 -30.68 288.84 -9.86 -40.54 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.06 Total: -0.70 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -2.98 Total: -18.99 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.02 Total: -39.42 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.17 Total: -2.65 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.68 -9.86 -40.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042419400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.801 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds