Wall clock time and date at job start Tue Mar 31 2020 05:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47344 * 240.00188 * 3 2 1 5 5 H 1.48508 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47214 * 119.99655 * 3 2 1 7 7 C 1.40052 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.46368 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27115 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 C 1.50698 * 109.47467 * 180.02562 * 12 11 9 14 14 C 1.38262 * 119.99506 * 269.72665 * 13 12 11 15 15 C 1.38220 * 120.02181 * 179.72607 * 14 13 12 16 16 C 1.38236 * 120.00578 * 0.54676 * 15 14 13 17 17 C 1.38306 * 119.99589 * 359.72733 * 16 15 14 18 18 Br 1.89096 * 120.01429 * 180.02562 * 17 16 15 19 19 C 1.38194 * 119.99642 * 89.99706 * 13 12 11 20 20 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 22 22 H 1.09009 * 109.47182 * 300.00268 * 12 11 9 23 23 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 24 24 H 1.08002 * 119.98928 * 359.97438 * 14 13 12 25 25 H 1.07998 * 119.99538 * 180.27535 * 15 14 13 26 26 H 1.08004 * 120.00605 * 179.75039 * 16 15 14 27 27 H 1.08006 * 120.00663 * 359.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 6 2.1957 -6.0618 0.0194 14 6 2.6413 -6.5972 -1.1750 15 6 3.5438 -7.6440 -1.1696 16 6 3.9926 -8.1637 0.0302 17 6 3.5428 -7.6323 1.2253 18 35 4.1569 -8.3422 2.8668 19 6 2.6438 -6.5807 1.2192 20 1 -0.4850 0.8400 -0.0004 21 1 2.9189 -3.6477 0.0070 22 1 0.5894 -4.9697 0.9028 23 1 0.5900 -4.9786 -0.8771 24 1 2.2872 -6.1946 -2.1125 25 1 3.8950 -8.0589 -2.1027 26 1 4.6947 -8.9843 0.0345 27 1 2.2926 -6.1651 2.1522 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042435437.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:12 Heat of formation + Delta-G solvation = -19.624530 kcal Electronic energy + Delta-G solvation = -13810.059096 eV Core-core repulsion = 11192.604436 eV Total energy + Delta-G solvation = -2617.454660 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.43775 -37.17069 -33.90275 -32.47135 -32.15083 -30.78277 -29.25593 -26.89565 -24.92582 -22.47669 -21.20735 -19.69050 -17.47577 -16.63317 -15.51540 -15.38546 -15.00301 -14.35708 -14.02541 -13.56877 -13.15297 -13.14552 -12.80335 -12.20016 -11.55023 -11.29031 -11.13161 -11.03685 -10.87265 -10.84888 -10.47201 -10.34025 -10.25823 -8.99636 -8.86030 -8.74247 -7.62933 -7.56142 -6.20055 -4.65977 1.06448 1.23213 1.55623 3.15522 3.20310 3.22248 3.55505 4.11181 4.56813 4.70636 4.80243 5.02109 5.11422 5.28109 5.34635 5.52747 5.76227 5.84710 6.07662 6.17470 6.28284 6.34069 6.67892 6.78631 7.42050 7.89110 8.03637 8.30315 9.00763 9.49474 10.57668 10.75693 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.029627 B = 0.003828 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.843237 B = 7312.881309 C = 7705.366207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.763 5.763 12 C 0.169 3.831 13 C -0.080 4.080 14 C -0.089 4.089 15 C -0.117 4.117 16 C -0.097 4.097 17 C -0.092 4.092 18 Br -0.059 7.059 19 C -0.076 4.076 20 H 0.269 0.731 21 H 0.381 0.619 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.801 -17.113 1.937 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.419 5.419 12 C 0.044 3.956 13 C -0.081 4.081 14 C -0.108 4.108 15 C -0.136 4.136 16 C -0.117 4.117 17 C -0.171 4.171 18 Br 0.026 6.974 19 C -0.096 4.096 20 H 0.080 0.920 21 H 0.213 0.787 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.149 0.851 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.917 -17.264 2.562 19.599 hybrid contribution 0.845 0.880 -0.345 1.268 sum 9.762 -16.385 2.216 19.201 Atomic orbital electron populations 1.70004 1.07062 1.27429 1.35173 1.25707 0.94631 1.00293 0.92603 0.86423 0.79810 0.80974 0.79473 1.19273 1.20547 1.19254 1.20839 0.93577 0.89286 1.54466 0.91437 1.18244 0.87209 0.82299 0.76358 1.90605 1.14063 1.86678 1.54968 1.46214 1.08635 1.04130 1.82944 1.19828 0.91961 0.81940 1.01834 1.20261 0.98136 0.97299 0.92448 1.21321 0.95912 0.95232 0.98326 1.21142 0.97843 0.97031 0.97577 1.21059 0.99725 0.99862 0.91019 1.21746 1.02997 1.00848 0.91509 1.96686 1.88271 1.84990 1.27466 1.21122 0.95287 0.94150 0.99072 0.92006 0.78721 0.92237 0.92107 0.85092 0.85193 0.85329 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.01 11.83 55.55 0.66 -22.35 15 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 15 3 Si 0.91 20.10 29.56 -169.99 -5.02 15.08 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.35 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 15 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 7 C -0.54 -15.36 9.54 -35.63 -0.34 -15.70 15 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 15 9 C 0.55 15.70 7.75 -12.99 -0.10 15.60 15 10 O -0.58 -18.72 15.02 5.20 0.08 -18.64 15 11 N -0.76 -16.92 5.54 -62.90 -0.35 -17.27 15 12 C 0.17 3.19 5.80 -5.19 -0.03 3.16 15 13 C -0.08 -1.19 5.25 -104.63 -0.55 -1.74 15 14 C -0.09 -1.14 9.70 -39.58 -0.38 -1.52 15 15 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 15 16 C -0.10 -1.07 9.79 -39.56 -0.39 -1.46 15 17 C -0.09 -1.15 6.22 -39.52 -0.25 -1.40 15 18 Br -0.06 -0.68 33.70 -68.01 -2.29 -2.97 15 19 C -0.08 -1.07 9.44 -39.56 -0.37 -1.44 15 20 H 0.27 7.32 8.29 -40.82 -0.34 6.98 15 21 H 0.38 7.60 8.44 -40.82 -0.34 7.26 15 22 H 0.06 1.18 8.09 -51.92 -0.42 0.76 15 23 H 0.06 1.18 8.08 -51.93 -0.42 0.76 15 24 H 0.13 1.57 8.06 -52.49 -0.42 1.14 15 25 H 0.13 1.05 8.06 -52.49 -0.42 0.62 15 26 H 0.13 1.15 8.06 -52.48 -0.42 0.73 15 27 H 0.13 1.88 8.06 -52.48 -0.42 1.46 15 LS Contribution 268.99 15.07 4.05 4.05 Total: -1.00 -33.04 268.99 -8.20 -41.24 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -2.42 Total: 4.67 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.90 Total: -3.81 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.31 Total: -39.62 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.08 Total: -18.64 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.97 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.04 -8.20 -41.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042435437.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.618 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds