Wall clock time and date at job start Tue Mar 31 2020 05:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47344 * 240.00188 * 3 2 1 5 5 H 1.48508 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47214 * 119.99655 * 3 2 1 7 7 C 1.40052 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.46368 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27115 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 C 1.50698 * 109.47467 * 180.02562 * 12 11 9 14 14 C 1.38262 * 119.99506 * 269.72665 * 13 12 11 15 15 C 1.38220 * 120.02181 * 179.72607 * 14 13 12 16 16 C 1.38236 * 120.00578 * 0.54676 * 15 14 13 17 17 C 1.38306 * 119.99589 * 359.72733 * 16 15 14 18 18 Br 1.89096 * 120.01429 * 180.02562 * 17 16 15 19 19 C 1.38194 * 119.99642 * 89.99706 * 13 12 11 20 20 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 22 22 H 1.09009 * 109.47182 * 300.00268 * 12 11 9 23 23 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 24 24 H 1.08002 * 119.98928 * 359.97438 * 14 13 12 25 25 H 1.07998 * 119.99538 * 180.27535 * 15 14 13 26 26 H 1.08004 * 120.00605 * 179.75039 * 16 15 14 27 27 H 1.08006 * 120.00663 * 359.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 6 2.1957 -6.0618 0.0194 14 6 2.6413 -6.5972 -1.1750 15 6 3.5438 -7.6440 -1.1696 16 6 3.9926 -8.1637 0.0302 17 6 3.5428 -7.6323 1.2253 18 35 4.1569 -8.3422 2.8668 19 6 2.6438 -6.5807 1.2192 20 1 -0.4850 0.8400 -0.0004 21 1 2.9189 -3.6477 0.0070 22 1 0.5894 -4.9697 0.9028 23 1 0.5900 -4.9786 -0.8771 24 1 2.2872 -6.1946 -2.1125 25 1 3.8950 -8.0589 -2.1027 26 1 4.6947 -8.9843 0.0345 27 1 2.2926 -6.1651 2.1522 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042435437.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:12 Heat of formation + Delta-G solvation = -41.860046 kcal Electronic energy + Delta-G solvation = -13811.023300 eV Core-core repulsion = 11192.604436 eV Total energy + Delta-G solvation = -2618.418864 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55578 -39.16864 -35.59599 -34.53143 -33.25005 -32.18904 -30.26755 -28.79602 -26.56935 -23.46084 -22.47007 -21.66573 -19.36717 -17.78086 -17.42843 -16.64465 -16.37626 -16.04806 -15.59023 -15.02380 -14.44846 -14.42677 -14.22028 -13.74253 -13.34756 -13.13300 -12.69666 -12.64670 -12.21429 -12.12756 -12.03981 -11.84264 -11.27685 -10.92542 -10.16238 -9.82055 -9.65021 -9.53216 -8.29742 -6.87068 0.06340 0.22365 0.59978 1.40596 1.43933 1.55810 2.24478 2.45880 2.53090 3.29696 3.58944 3.62658 3.85516 4.07367 4.26463 4.29437 4.47367 4.70719 4.80006 4.91151 5.16296 5.30959 5.31787 5.52986 5.79444 5.85504 6.16484 6.23988 6.85576 7.50585 8.46492 8.65656 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.029627 B = 0.003828 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.843237 B = 7312.881309 C = 7705.366207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.538 3.462 10 O -0.632 6.632 11 N -0.749 5.749 12 C 0.175 3.825 13 C -0.095 4.095 14 C -0.092 4.092 15 C -0.105 4.105 16 C -0.086 4.086 17 C -0.100 4.100 18 Br -0.049 7.049 19 C -0.087 4.087 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.041 0.959 23 H 0.050 0.950 24 H 0.137 0.863 25 H 0.167 0.833 26 H 0.157 0.843 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.416 -17.740 1.334 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.610 4.610 8 H 0.105 0.895 9 C 0.343 3.657 10 O -0.519 6.519 11 N -0.404 5.404 12 C 0.050 3.950 13 C -0.096 4.096 14 C -0.111 4.111 15 C -0.123 4.123 16 C -0.106 4.106 17 C -0.179 4.179 18 Br 0.036 6.964 19 C -0.107 4.107 20 H 0.085 0.915 21 H 0.227 0.773 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.155 0.845 25 H 0.185 0.815 26 H 0.175 0.825 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.580 -17.946 1.961 21.447 hybrid contribution 0.060 0.923 -0.145 0.936 sum 11.640 -17.023 1.816 20.702 Atomic orbital electron populations 1.70174 1.09537 1.29092 1.36286 1.26986 0.95542 1.04974 0.91168 0.85061 0.78199 0.74651 0.80318 1.17711 1.19871 1.17897 1.21397 0.94738 0.90018 1.54830 0.89465 1.18620 0.86830 0.84211 0.76078 1.90557 1.16165 1.87872 1.57325 1.45860 1.09186 1.04114 1.81249 1.19765 0.92702 0.82102 1.00384 1.19843 0.98867 0.96963 0.93974 1.21457 0.96235 0.95816 0.97568 1.21502 0.96193 0.95546 0.99063 1.21463 0.99085 0.99773 0.90294 1.21870 1.02757 1.00524 0.92783 1.96697 1.87965 1.84601 1.27117 1.21039 0.96189 0.95115 0.98349 0.91484 0.77269 0.94081 0.93191 0.84509 0.81545 0.82489 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.57 11.83 21.84 0.26 -50.31 15 2 C 0.03 1.60 5.50 85.31 0.47 2.07 15 3 Si 1.00 40.94 29.56 68.60 2.03 42.97 15 4 H -0.25 -9.71 7.11 99.48 0.71 -9.01 15 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 6 H -0.25 -9.86 7.11 99.48 0.71 -9.15 15 7 C -0.57 -32.69 9.54 24.83 0.24 -32.46 15 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 15 9 C 0.54 31.52 7.75 86.36 0.67 32.19 15 10 O -0.63 -42.74 15.02 -4.33 -0.06 -42.81 15 11 N -0.75 -34.14 5.54 -471.14 -2.61 -36.75 15 12 C 0.17 6.87 5.80 85.63 0.50 7.37 15 13 C -0.10 -2.82 5.25 -19.87 -0.10 -2.92 15 14 C -0.09 -2.20 9.70 22.27 0.22 -1.98 15 15 C -0.10 -1.88 10.05 22.26 0.22 -1.65 15 16 C -0.09 -1.61 9.79 22.29 0.22 -1.39 15 17 C -0.10 -2.33 6.22 22.31 0.14 -2.19 15 18 Br -0.05 -1.04 33.70 -20.37 -0.69 -1.72 15 19 C -0.09 -2.41 9.44 22.29 0.21 -2.19 15 20 H 0.28 15.34 8.29 -92.71 -0.77 14.57 15 21 H 0.39 15.81 8.44 -92.71 -0.78 15.02 15 22 H 0.04 1.74 8.09 -2.38 -0.02 1.72 15 23 H 0.05 2.05 8.08 -2.39 -0.02 2.03 15 24 H 0.14 3.07 8.06 -2.91 -0.02 3.05 15 25 H 0.17 1.82 8.06 -2.91 -0.02 1.80 15 26 H 0.16 2.07 8.06 -2.91 -0.02 2.05 15 27 H 0.12 3.59 8.06 -2.91 -0.02 3.56 15 Total: -1.00 -73.96 268.99 2.11 -71.85 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.41 Total: 19.95 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 2.77 Total: -3.17 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.35 Total: -87.06 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.06 Total: -42.81 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 35 Polarization: -1.04 SS G_CDS: -0.69 Total: -1.72 kcal Total: -73.96 2.11 -71.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042435437.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.987 kcal (2) G-P(sol) polarization free energy of solvation -73.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds