Wall clock time and date at job start Tue Mar 31 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46503 * 109.46862 * 2 1 4 4 C 1.46508 * 119.99846 * 262.47738 * 3 2 1 5 5 C 1.50695 * 109.47263 * 270.00417 * 4 3 2 6 6 H 1.08006 * 120.00141 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00090 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00143 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47199 * 90.00246 * 9 7 5 11 11 H 1.48503 * 109.46729 * 209.99882 * 9 7 5 12 12 H 1.48502 * 109.47283 * 329.99815 * 9 7 5 13 13 C 1.34774 * 120.00288 * 82.48238 * 3 2 1 14 14 O 1.21619 * 119.99869 * 182.37138 * 13 3 2 15 15 C 1.47200 * 119.99876 * 2.36728 * 13 3 2 16 16 C 1.36629 * 125.15876 * 172.24312 * 15 13 3 17 17 C 1.36767 * 114.75171 * 179.97438 * 16 15 13 18 18 C 1.36680 * 114.73946 * 359.97438 * 17 16 15 19 19 C 1.47011 * 125.16950 * 179.97438 * 18 17 16 20 20 O 1.21551 * 119.99900 * 359.97438 * 19 18 17 21 21 O 1.34822 * 120.00366 * 180.02562 * 19 18 17 22 22 S 1.75836 * 109.66905 * 0.02562 * 18 17 16 23 23 H 1.09002 * 109.46615 * 60.00226 * 1 2 3 24 24 H 1.08989 * 109.46687 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46641 * 300.00212 * 1 2 3 26 26 H 1.08993 * 109.46953 * 240.00472 * 2 1 3 27 27 H 1.08993 * 109.46826 * 119.99674 * 2 1 3 28 28 H 1.08994 * 109.46905 * 30.00184 * 4 3 2 29 29 H 1.09000 * 109.46864 * 150.00224 * 4 3 2 30 30 H 0.96996 * 120.00519 * 179.97438 * 8 7 5 31 31 H 1.08003 * 122.62394 * 0.23295 * 16 15 13 32 32 H 1.08004 * 122.63186 * 180.02562 * 17 16 15 33 33 H 0.96693 * 117.00485 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4191 2.0165 -1.2579 5 6 3.8845 1.7648 -1.5033 6 1 4.4600 1.1895 -0.7930 7 6 4.4909 2.2698 -2.6339 8 7 3.7906 2.9715 -3.4979 9 14 6.3075 1.9583 -2.9376 10 1 6.4717 0.7021 -3.7125 11 1 6.8825 3.0921 -3.7052 12 1 7.0126 1.8332 -1.6366 13 6 2.0990 2.0675 1.1571 14 8 2.4633 3.2279 1.1518 15 6 1.7461 1.4127 2.4273 16 6 1.9301 1.9529 3.6687 17 6 1.5246 1.1579 4.7050 18 6 1.0008 -0.0476 4.3301 19 6 0.4967 -1.0755 5.2524 20 8 0.5279 -0.8835 6.4522 21 8 0.0007 -2.2316 4.7675 22 16 1.0227 -0.1830 2.5771 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8362 1.5978 -2.0782 29 1 2.2402 3.0900 -1.1959 30 1 4.2172 3.3271 -4.2932 31 1 2.3582 2.9329 3.8196 32 1 1.6108 1.4592 5.7386 33 1 -0.3186 -2.8772 5.4126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042453755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:25 Heat of formation + Delta-G solvation = -84.393824 kcal Electronic energy + Delta-G solvation = -19677.520129 eV Core-core repulsion = 16409.561348 eV Total energy + Delta-G solvation = -3267.958781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25974 -39.38490 -37.33729 -36.19045 -35.51443 -32.98922 -30.67952 -30.07594 -27.59682 -25.78811 -23.30013 -23.26029 -22.36033 -20.19256 -19.03515 -18.33175 -17.41717 -16.79841 -16.48944 -15.88635 -15.80042 -15.20134 -14.68387 -14.41192 -14.05517 -13.93570 -13.37728 -13.13836 -12.82633 -12.41539 -12.27526 -12.14690 -11.83529 -11.77859 -11.37050 -11.21592 -11.10195 -10.98604 -10.71255 -10.43304 -10.19356 -9.76596 -9.35168 -8.92300 -8.51823 -8.44220 -7.88239 -6.12786 -4.18418 0.02370 1.35155 1.75934 1.94699 2.76896 2.77693 3.25892 3.33114 3.36486 3.55424 3.67918 4.38066 4.72438 4.99116 5.04176 5.16030 5.22309 5.30429 5.32237 5.51695 5.79640 5.88860 5.99108 6.02414 6.18377 6.22358 6.29278 6.88315 7.27113 7.35160 7.61910 7.82490 8.10368 8.13213 8.69256 8.87963 9.47200 10.95342 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.004350 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.969821 B = 6434.933090 C = 6632.166091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.094 3.906 3 N -0.586 5.586 4 C 0.247 3.753 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.571 3.429 14 O -0.518 6.518 15 C -0.209 4.209 16 C -0.094 4.094 17 C -0.051 4.051 18 C -0.295 4.295 19 C 0.560 3.440 20 O -0.512 6.512 21 O -0.512 6.512 22 S 0.276 5.724 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.265 0.735 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.663 -10.355 12.070 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.033 4.033 3 N -0.317 5.317 4 C 0.128 3.872 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.355 3.645 14 O -0.396 6.396 15 C -0.331 4.331 16 C -0.126 4.126 17 C -0.085 4.085 18 C -0.413 4.413 19 C 0.404 3.596 20 O -0.402 6.402 21 O -0.324 6.324 22 S 0.548 5.452 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.123 0.877 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.177 0.823 32 H 0.169 0.831 33 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -8.770 -10.444 10.862 17.435 hybrid contribution 1.281 0.401 1.294 1.864 sum -7.489 -10.044 12.156 17.456 Atomic orbital electron populations 1.22484 0.95798 1.02806 1.02988 1.21775 0.94316 0.84587 1.02576 1.48240 1.62040 1.12521 1.08914 1.19419 0.95370 0.94760 0.77639 1.21409 0.94508 1.34542 1.06649 0.92302 1.24920 0.98478 0.94718 0.95776 1.69917 1.36391 1.35076 1.11735 0.86478 0.84723 0.77806 0.78329 1.20551 1.21005 1.19829 1.17055 0.79259 0.86217 0.81926 1.90806 1.47081 1.15947 1.85759 1.25644 1.08469 0.99691 0.99294 1.20473 1.00840 1.01864 0.89451 1.20466 0.95827 0.91034 1.01193 1.24473 1.15456 0.99169 1.02155 1.19546 0.73801 0.80199 0.86072 1.90908 1.53661 1.79157 1.16443 1.84583 1.74344 1.28087 1.45408 1.85118 1.53862 1.12133 0.94105 0.90993 0.90880 0.92144 0.87725 0.91672 0.94407 0.93318 0.92562 0.82300 0.83140 0.72509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.93 37.16 0.33 -1.89 16 2 C 0.09 1.42 5.68 -4.04 -0.02 1.40 16 3 N -0.59 -11.92 2.48 -176.41 -0.44 -12.36 16 4 C 0.25 6.14 5.14 -5.19 -0.03 6.12 16 5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 9 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.57 11.79 7.59 -12.62 -0.10 11.70 16 14 O -0.52 -12.78 16.40 5.26 0.09 -12.69 16 15 C -0.21 -3.36 6.13 -36.53 -0.22 -3.58 16 16 C -0.09 -1.35 9.89 -40.70 -0.40 -1.76 16 17 C -0.05 -0.65 9.88 -40.68 -0.40 -1.05 16 18 C -0.29 -3.74 6.46 -36.59 -0.24 -3.98 16 19 C 0.56 6.71 8.32 34.29 0.29 6.99 16 20 O -0.51 -7.30 17.60 -19.30 -0.34 -7.64 16 21 O -0.51 -4.42 13.28 -40.83 -0.54 -4.96 16 22 S 0.28 3.44 15.36 -107.50 -1.65 1.79 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.68 8.14 -51.94 -0.42 0.25 16 25 H 0.06 0.74 6.02 -44.80 -0.27 0.47 16 26 H 0.10 1.58 8.01 -51.93 -0.42 1.16 16 27 H 0.07 0.90 4.42 -21.83 -0.10 0.80 16 28 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 29 H 0.05 1.37 7.39 -51.93 -0.38 0.99 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.16 2.19 8.05 -52.48 -0.42 1.77 16 32 H 0.15 1.66 8.04 -52.48 -0.42 1.24 16 33 H 0.42 1.53 9.11 45.56 0.42 1.95 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -33.69 303.64 -6.21 -39.90 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -2.40 Total: -0.67 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.21 Total: 0.75 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.30 Total: -37.32 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.80 Total: -25.29 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.65 Total: 1.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.69 -6.21 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042453755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.491 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds