Wall clock time and date at job start Tue Mar 31 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46503 * 109.46862 * 2 1 4 4 C 1.46508 * 119.99846 * 262.47738 * 3 2 1 5 5 C 1.50695 * 109.47263 * 270.00417 * 4 3 2 6 6 H 1.08006 * 120.00141 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00090 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00143 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47199 * 90.00246 * 9 7 5 11 11 H 1.48503 * 109.46729 * 209.99882 * 9 7 5 12 12 H 1.48502 * 109.47283 * 329.99815 * 9 7 5 13 13 C 1.34774 * 120.00288 * 82.48238 * 3 2 1 14 14 O 1.21619 * 119.99869 * 182.37138 * 13 3 2 15 15 C 1.47200 * 119.99876 * 2.36728 * 13 3 2 16 16 C 1.36629 * 125.15876 * 172.24312 * 15 13 3 17 17 C 1.36767 * 114.75171 * 179.97438 * 16 15 13 18 18 C 1.36680 * 114.73946 * 359.97438 * 17 16 15 19 19 C 1.47011 * 125.16950 * 179.97438 * 18 17 16 20 20 O 1.21551 * 119.99900 * 359.97438 * 19 18 17 21 21 O 1.34822 * 120.00366 * 180.02562 * 19 18 17 22 22 S 1.75836 * 109.66905 * 0.02562 * 18 17 16 23 23 H 1.09002 * 109.46615 * 60.00226 * 1 2 3 24 24 H 1.08989 * 109.46687 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46641 * 300.00212 * 1 2 3 26 26 H 1.08993 * 109.46953 * 240.00472 * 2 1 3 27 27 H 1.08993 * 109.46826 * 119.99674 * 2 1 3 28 28 H 1.08994 * 109.46905 * 30.00184 * 4 3 2 29 29 H 1.09000 * 109.46864 * 150.00224 * 4 3 2 30 30 H 0.96996 * 120.00519 * 179.97438 * 8 7 5 31 31 H 1.08003 * 122.62394 * 0.23295 * 16 15 13 32 32 H 1.08004 * 122.63186 * 180.02562 * 17 16 15 33 33 H 0.96693 * 117.00485 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4191 2.0165 -1.2579 5 6 3.8845 1.7648 -1.5033 6 1 4.4600 1.1895 -0.7930 7 6 4.4909 2.2698 -2.6339 8 7 3.7906 2.9715 -3.4979 9 14 6.3075 1.9583 -2.9376 10 1 6.4717 0.7021 -3.7125 11 1 6.8825 3.0921 -3.7052 12 1 7.0126 1.8332 -1.6366 13 6 2.0990 2.0675 1.1571 14 8 2.4633 3.2279 1.1518 15 6 1.7461 1.4127 2.4273 16 6 1.9301 1.9529 3.6687 17 6 1.5246 1.1579 4.7050 18 6 1.0008 -0.0476 4.3301 19 6 0.4967 -1.0755 5.2524 20 8 0.5279 -0.8835 6.4522 21 8 0.0007 -2.2316 4.7675 22 16 1.0227 -0.1830 2.5771 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8362 1.5978 -2.0782 29 1 2.2402 3.0900 -1.1959 30 1 4.2172 3.3271 -4.2932 31 1 2.3582 2.9329 3.8196 32 1 1.6108 1.4592 5.7386 33 1 -0.3186 -2.8772 5.4126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042453755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:25 Heat of formation + Delta-G solvation = -107.959128 kcal Electronic energy + Delta-G solvation = -19678.541997 eV Core-core repulsion = 16409.561348 eV Total energy + Delta-G solvation = -3268.980649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17627 -40.92943 -38.44589 -37.18629 -36.97588 -35.00794 -32.16600 -31.26372 -29.30489 -27.15862 -25.00951 -24.50240 -23.44809 -21.58107 -20.04418 -19.41870 -18.78267 -18.53704 -17.96059 -17.13811 -16.77693 -16.70284 -16.25848 -16.00391 -15.30462 -15.20564 -14.52474 -14.45392 -14.16729 -13.84105 -13.71696 -13.39794 -13.35472 -13.03510 -12.73236 -12.66323 -12.55134 -12.36073 -12.22475 -12.06034 -11.77997 -11.49973 -11.01068 -10.64330 -10.11971 -9.63207 -9.40050 -8.23957 -6.38585 -1.09551 0.24324 0.67573 0.86153 1.38064 1.40922 1.50926 1.74351 1.94618 2.03378 2.19063 2.40181 3.06632 3.41642 3.82830 4.05628 4.16406 4.17580 4.28262 4.42293 4.76146 4.82282 4.89078 4.93904 5.03853 5.15061 5.20275 5.29371 5.46474 5.48091 5.75195 6.01911 6.50688 6.69359 6.88280 7.12630 7.33648 8.83488 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.004350 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.969821 B = 6434.933090 C = 6632.166091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 N -0.593 5.593 4 C 0.262 3.738 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.565 3.435 14 O -0.577 6.577 15 C -0.253 4.253 16 C -0.082 4.082 17 C -0.056 4.056 18 C -0.291 4.291 19 C 0.568 3.432 20 O -0.535 6.535 21 O -0.501 6.501 22 S 0.343 5.657 23 H 0.060 0.940 24 H 0.114 0.886 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.004 0.996 30 H 0.268 0.732 31 H 0.155 0.845 32 H 0.169 0.831 33 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 -13.160 13.271 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.039 4.039 3 N -0.322 5.322 4 C 0.141 3.859 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.353 3.647 14 O -0.459 6.459 15 C -0.375 4.375 16 C -0.115 4.115 17 C -0.089 4.089 18 C -0.409 4.409 19 C 0.412 3.588 20 O -0.427 6.427 21 O -0.316 6.316 22 S 0.616 5.384 23 H 0.079 0.921 24 H 0.132 0.868 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.173 0.827 32 H 0.186 0.814 33 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -9.187 -13.339 12.062 20.194 hybrid contribution 1.301 1.171 0.994 2.013 sum -7.886 -12.168 13.057 19.512 Atomic orbital electron populations 1.22471 0.93188 1.05286 1.02563 1.22119 0.96427 0.81725 1.03621 1.48204 1.62068 1.14472 1.07505 1.18882 0.94603 0.92618 0.79784 1.21677 0.95668 1.34571 1.06687 0.92801 1.25794 1.03045 0.94323 0.95511 1.70029 1.38305 1.35873 1.12244 0.85438 0.79035 0.78334 0.78145 1.18664 1.20690 1.19938 1.17623 0.78086 0.85726 0.83264 1.90752 1.49752 1.18487 1.86892 1.25163 1.12275 1.02681 0.97367 1.20569 0.99692 1.01883 0.89395 1.20520 0.95944 0.90914 1.01497 1.24773 1.14096 0.99401 1.02639 1.19325 0.73450 0.80710 0.85301 1.90916 1.54647 1.79787 1.17335 1.84525 1.73536 1.27394 1.46108 1.84628 1.51836 1.08495 0.93446 0.92056 0.86792 0.92027 0.87650 0.89846 0.94676 0.97762 0.92279 0.82697 0.81396 0.69684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 8.93 71.99 0.64 -3.30 16 2 C 0.09 2.50 5.68 86.38 0.49 2.99 16 3 N -0.59 -24.78 2.48 -830.30 -2.06 -26.84 16 4 C 0.26 13.69 5.14 85.63 0.44 14.13 16 5 C -0.55 -30.78 9.39 25.60 0.24 -30.54 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.72 5.46 84.66 0.46 1.19 16 8 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 9 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.57 24.26 7.59 86.60 0.66 24.92 16 14 O -0.58 -30.31 16.40 -4.09 -0.07 -30.38 16 15 C -0.25 -8.06 6.13 24.25 0.15 -7.91 16 16 C -0.08 -2.31 9.89 21.55 0.21 -2.10 16 17 C -0.06 -1.30 9.88 21.56 0.21 -1.09 16 18 C -0.29 -6.51 6.46 24.21 0.16 -6.36 16 19 C 0.57 11.60 8.32 70.12 0.58 12.19 16 20 O -0.53 -13.67 17.60 19.67 0.35 -13.32 16 21 O -0.50 -6.45 13.28 -57.34 -0.76 -7.21 16 22 S 0.34 7.59 15.36 -56.49 -0.87 6.72 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.37 6.02 -6.92 -0.04 1.33 16 26 H 0.11 3.07 8.01 -2.39 -0.02 3.05 16 27 H 0.08 2.11 4.42 -21.53 -0.10 2.02 16 28 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 29 H 0.00 0.26 7.39 -2.39 -0.02 0.24 16 30 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.16 4.39 8.05 -2.91 -0.02 4.37 16 32 H 0.17 3.32 8.04 -2.91 -0.02 3.30 16 33 H 0.44 1.26 9.11 -74.06 -0.67 0.59 16 Total: -1.00 -75.88 303.64 3.53 -72.35 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.37 Total: 2.87 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 4.25 Total: 4.12 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -1.77 Total: -81.11 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.48 Total: -50.91 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 7.59 SS G_CDS: -0.87 Total: 6.72 kcal Total: -75.88 3.53 -72.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042453755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.610 kcal (2) G-P(sol) polarization free energy of solvation -75.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds