Wall clock time and date at job start Tue Mar 31 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99817 * 2 1 4 4 H 1.48494 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47270 * 300.00298 * 3 2 1 6 6 H 1.48503 * 109.46797 * 60.00593 * 3 2 1 7 7 C 1.38943 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00293 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00273 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99783 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99869 * 179.97438 * 10 9 7 13 13 O 1.42903 * 109.47072 * 180.02562 * 12 10 9 14 14 C 1.35678 * 117.00326 * 180.02562 * 13 12 10 15 15 C 1.39061 * 119.89091 * 0.26770 * 14 13 12 16 16 C 1.37590 * 120.13329 * 180.23702 * 15 14 13 17 17 C 1.40050 * 119.90267 * 359.49337 * 16 15 14 18 18 C 1.46860 * 120.10869 * 180.23274 * 17 16 15 19 19 O 1.21297 * 120.00090 * 359.97438 * 18 17 16 20 20 C 1.40025 * 119.78202 * 0.25886 * 17 16 15 21 21 C 1.37704 * 119.86584 * 359.97438 * 20 17 16 22 22 Cl 1.73606 * 119.95099 * 180.02562 * 21 20 17 23 23 H 0.96999 * 119.99994 * 359.97438 * 1 2 3 24 24 H 0.97006 * 119.99740 * 0.02562 * 9 7 2 25 25 H 1.09000 * 109.46958 * 60.00865 * 12 10 9 26 26 H 1.08998 * 109.47786 * 299.99954 * 12 10 9 27 27 H 1.08005 * 119.92834 * 359.97438 * 15 14 13 28 28 H 1.08002 * 120.05129 * 179.77773 * 16 15 14 29 29 H 1.07996 * 119.99960 * 180.02562 * 18 17 16 30 30 H 1.07994 * 120.06503 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 0.0000 13 8 2.1724 -5.9490 0.0005 14 6 1.6539 -7.2028 0.0006 15 6 0.2749 -7.3825 -0.0055 16 6 -0.2563 -8.6517 -0.0006 17 6 0.5940 -9.7645 -0.0002 18 6 0.0319 -11.1212 -0.0001 19 8 -1.1708 -11.2794 0.0001 20 6 1.9820 -9.5792 0.0007 21 6 2.5037 -8.3048 0.0006 22 17 4.2241 -8.0726 0.0010 23 1 -0.4850 0.8400 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6169 -4.9208 -0.8898 26 1 0.6175 -4.9205 0.8902 27 1 -0.3803 -6.5239 -0.0098 28 1 -1.3275 -8.7896 -0.0017 29 1 0.6892 -11.9781 0.0006 30 1 2.6419 -10.4341 0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043488907.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:18 Heat of formation + Delta-G solvation = -108.969535 kcal Electronic energy + Delta-G solvation = -18591.969417 eV Core-core repulsion = 15185.068153 eV Total energy + Delta-G solvation = -3406.901264 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58175 -40.37581 -39.67565 -38.17959 -37.29660 -36.05549 -33.42642 -32.14702 -31.78581 -29.70283 -26.70871 -25.43095 -23.96541 -22.02036 -21.33885 -20.09463 -19.55816 -18.10167 -17.74617 -17.40170 -17.16354 -16.66090 -16.12286 -15.83564 -15.69068 -15.51086 -15.09810 -14.99285 -14.77061 -14.01582 -13.98330 -13.58566 -13.53324 -12.98242 -12.55901 -12.47558 -12.32721 -12.12864 -12.12076 -11.92934 -11.59671 -10.79300 -10.49471 -10.11446 -10.06683 -9.36826 -8.53665 -6.03395 -0.42893 0.06008 1.12328 1.33572 1.40301 1.41429 1.53936 1.72931 1.87821 2.31529 2.60923 3.12286 3.13383 3.36017 3.62310 3.68035 3.99726 4.06951 4.15508 4.18203 4.25009 4.50205 4.62189 4.81941 4.99220 5.20395 5.36405 5.43254 5.86175 6.08259 6.49530 6.51349 7.03642 7.40571 7.95751 8.63409 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.028392 B = 0.003465 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.972664 B = 8079.746531 C = 9050.573702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.006 4.006 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.557 5.557 10 C 0.434 3.566 11 O -0.621 6.621 12 C 0.059 3.941 13 O -0.298 6.298 14 C 0.155 3.845 15 C -0.217 4.217 16 C -0.017 4.017 17 C -0.231 4.231 18 C 0.402 3.598 19 O -0.506 6.506 20 C -0.003 4.003 21 C -0.106 4.106 22 Cl -0.063 7.063 23 H 0.281 0.719 24 H 0.401 0.599 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.159 0.841 28 H 0.150 0.850 29 H 0.160 0.840 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 -19.663 -0.002 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.207 4.207 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.507 6.507 12 C -0.019 4.019 13 O -0.209 6.209 14 C 0.106 3.894 15 C -0.236 4.236 16 C -0.035 4.035 17 C -0.232 4.232 18 C 0.264 3.736 19 O -0.382 6.382 20 C -0.022 4.022 21 C -0.133 4.133 22 Cl -0.034 7.034 23 H 0.090 0.910 24 H 0.236 0.764 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.177 0.823 28 H 0.168 0.832 29 H 0.176 0.824 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.535 -19.488 -0.002 19.548 hybrid contribution 0.039 1.391 0.002 1.392 sum -1.496 -18.097 0.000 18.159 Atomic orbital electron populations 1.69653 1.06754 1.29610 1.49316 1.26037 0.96572 1.02336 0.95737 0.84862 0.78028 0.76912 0.78500 1.19881 1.19402 1.19391 1.19701 0.92809 0.83580 1.50578 0.90224 1.41706 1.09536 1.04059 1.64221 1.20248 0.88109 0.85638 0.83923 1.90556 1.15895 1.87738 1.56560 1.22497 0.90878 0.82960 1.05535 1.86198 1.35851 1.12065 1.86819 1.19535 0.92731 0.84140 0.92949 1.21462 0.92181 1.00463 1.09489 1.21525 1.01373 0.90697 0.89885 1.21066 0.93308 0.97636 1.11209 1.24489 0.89946 0.91398 0.67783 1.90550 1.20955 1.89238 1.37413 1.21411 0.94736 0.94796 0.91232 1.20385 0.85193 0.93321 1.14449 1.98392 1.10283 1.97517 1.97240 0.90971 0.76383 0.86831 0.86844 0.82349 0.83228 0.82449 0.79697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.30 13.05 21.66 0.28 -47.01 16 2 C -0.01 -0.31 5.50 84.92 0.47 0.16 16 3 Si 0.99 41.76 29.55 68.60 2.03 43.79 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.34 -18.75 9.68 84.04 0.81 -17.94 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 9 N -0.56 -27.62 5.29 -306.98 -1.62 -29.25 16 10 C 0.43 20.55 7.86 87.66 0.69 21.24 16 11 O -0.62 -35.60 16.08 15.96 0.26 -35.34 16 12 C 0.06 1.96 5.21 71.24 0.37 2.34 16 13 O -0.30 -10.60 9.11 -70.93 -0.65 -11.24 16 14 C 0.15 4.25 6.69 22.69 0.15 4.40 16 15 C -0.22 -4.68 9.01 22.31 0.20 -4.48 16 16 C -0.02 -0.31 9.59 22.56 0.22 -0.09 16 17 C -0.23 -3.63 5.87 -20.15 -0.12 -3.75 16 18 C 0.40 4.99 11.44 70.08 0.80 5.79 16 19 O -0.51 -10.70 17.16 -3.08 -0.05 -10.76 16 20 C 0.00 -0.05 9.56 22.58 0.22 0.16 16 21 C -0.11 -2.57 6.32 22.36 0.14 -2.43 16 22 Cl -0.06 -1.73 28.49 -2.72 -0.08 -1.80 16 23 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 24 H 0.40 18.28 7.90 -92.70 -0.73 17.55 16 25 H 0.11 3.04 7.64 -2.39 -0.02 3.02 16 26 H 0.11 3.04 7.66 -2.39 -0.02 3.02 16 27 H 0.16 2.86 6.27 -2.91 -0.02 2.84 16 28 H 0.15 2.50 7.64 -2.91 -0.02 2.48 16 29 H 0.16 0.36 8.06 -2.91 -0.02 0.33 16 30 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -73.88 295.46 4.59 -69.29 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.47 Total: 16.92 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 3.95 Total: 5.40 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -1.34 Total: -76.26 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -0.44 Total: -57.34 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.80 kcal Total: -73.88 4.59 -69.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043488907.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.678 kcal (2) G-P(sol) polarization free energy of solvation -73.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds