Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36880 * 119.99947 * 2 1 4 4 H 1.07997 * 120.00031 * 193.21028 * 3 2 1 5 5 C 1.39045 * 120.00010 * 13.20148 * 3 2 1 6 6 N 1.31368 * 119.99827 * 29.00488 * 5 3 2 7 7 Si 1.86799 * 120.00320 * 209.00203 * 5 3 2 8 8 H 1.48504 * 109.47210 * 94.99703 * 7 5 3 9 9 H 1.48491 * 109.47360 * 214.99645 * 7 5 3 10 10 H 1.48502 * 109.46810 * 335.00024 * 7 5 3 11 11 C 1.34776 * 120.00178 * 179.97438 * 2 1 3 12 12 O 1.21595 * 119.99932 * 184.76217 * 11 2 1 13 13 C 1.47672 * 119.99878 * 4.76909 * 11 2 1 14 14 C 1.39693 * 120.15825 * 311.53542 * 13 11 2 15 15 C 1.37885 * 119.85448 * 179.97438 * 14 13 11 16 16 C 1.38425 * 120.17925 * 359.97438 * 15 14 13 17 17 C 1.38304 * 120.32718 * 359.97438 * 16 15 14 18 18 C 1.38090 * 120.13621 * 0.02562 * 17 16 15 19 19 Br 1.89099 * 120.08669 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.46749 * 267.78849 * 1 2 3 21 21 H 1.08994 * 109.46970 * 27.78721 * 1 2 3 22 22 H 1.08998 * 109.46851 * 147.78867 * 1 2 3 23 23 H 0.97007 * 119.99869 * 180.02562 * 6 5 3 24 24 H 1.07998 * 120.06975 * 359.95551 * 14 13 11 25 25 H 1.08002 * 119.90836 * 180.02562 * 15 14 13 26 26 H 1.08007 * 119.83813 * 180.02562 * 16 15 14 27 27 H 1.08000 * 119.92967 * 179.72192 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.2080 1.1978 -0.2137 5 6 1.4818 2.3737 0.2750 6 7 0.4252 2.3679 1.0556 7 14 2.0872 3.9782 -0.4654 8 1 1.3380 4.2600 -1.7163 9 1 1.8687 5.0834 0.5020 10 1 3.5362 3.8668 -0.7707 11 6 2.1390 -1.1672 0.0005 12 8 3.3518 -1.1689 0.0879 13 6 1.4044 -2.4439 -0.1052 14 6 0.2979 -2.6867 0.7120 15 6 -0.3837 -3.8808 0.6077 16 6 0.0255 -4.8382 -0.3046 17 6 1.1194 -4.6052 -1.1181 18 6 1.8117 -3.4140 -1.0247 19 35 3.3076 -3.0972 -2.1373 20 1 -0.3633 -0.0397 1.0269 21 1 -0.3633 0.9091 -0.4791 22 1 -0.3633 -0.8695 -0.5478 23 1 -0.0409 3.1968 1.2472 24 1 -0.0229 -1.9409 1.4243 25 1 -1.2396 -4.0693 1.2388 26 1 -0.5127 -5.7714 -0.3820 27 1 1.4358 -5.3584 -1.8245 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = 11.695901 kcal Electronic energy + Delta-G solvation = -14652.241107 eV Core-core repulsion = 12036.144603 eV Total energy + Delta-G solvation = -2616.096504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.47951 -37.50612 -34.73589 -32.06009 -31.83568 -30.61890 -28.82653 -26.36306 -24.95376 -22.77306 -21.99134 -19.42943 -17.09936 -16.57785 -15.80752 -15.11419 -14.97610 -14.21881 -13.94738 -13.66759 -13.16460 -12.84728 -12.58684 -11.77039 -11.71214 -11.51164 -11.20715 -10.94134 -10.76875 -10.46505 -10.35592 -10.28903 -9.70775 -8.99412 -8.69551 -8.37113 -8.30001 -7.80076 -6.50761 -3.81567 1.25995 1.44655 2.10438 3.12198 3.23883 3.29770 3.62158 4.05936 4.15643 4.72796 4.98144 5.04394 5.16478 5.32878 5.60814 5.62774 5.87233 6.08880 6.26416 6.39852 6.52582 6.60270 6.70572 6.97711 7.04088 7.50170 8.02923 8.41144 9.11853 9.34364 9.93786 10.55345 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.007396 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.489445 B = 3785.020373 C = 4735.046853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.426 5.426 3 C -0.310 4.310 4 H 0.108 0.892 5 C 0.036 3.964 6 N -0.858 5.858 7 Si 0.916 3.084 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.266 1.266 11 C 0.463 3.537 12 O -0.566 6.566 13 C -0.063 4.063 14 C -0.095 4.095 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.101 4.101 18 C -0.061 4.061 19 Br -0.038 7.038 20 H 0.054 0.946 21 H 0.073 0.927 22 H 0.035 0.965 23 H 0.270 0.730 24 H 0.137 0.863 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -11.558 -4.389 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.143 5.143 3 C -0.438 4.438 4 H 0.125 0.875 5 C -0.169 4.169 6 N -0.495 5.495 7 Si 0.742 3.258 8 H -0.202 1.202 9 H -0.210 1.210 10 H -0.190 1.190 11 C 0.251 3.749 12 O -0.451 6.451 13 C -0.068 4.068 14 C -0.114 4.114 15 C -0.132 4.132 16 C -0.138 4.138 17 C -0.121 4.121 18 C -0.142 4.142 19 Br 0.048 6.952 20 H 0.072 0.928 21 H 0.091 0.909 22 H 0.054 0.946 23 H 0.080 0.920 24 H 0.155 0.845 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.629 -11.242 -4.683 12.459 hybrid contribution -0.400 0.759 0.061 0.860 sum -3.028 -10.483 -4.622 11.850 Atomic orbital electron populations 1.21692 0.81373 1.00291 1.00866 1.43531 1.05407 1.04768 1.60548 1.19716 0.96079 0.81855 1.46115 0.87480 1.25250 0.96628 0.99703 0.95344 1.70138 1.21015 1.28946 1.29385 0.86069 0.79817 0.80809 0.79095 1.20245 1.20998 1.19041 1.17664 0.87574 0.82690 0.86959 1.90662 1.12865 1.85989 1.55538 1.20305 0.95265 0.96079 0.95164 1.21562 0.93776 0.97515 0.98571 1.21168 0.99919 0.93542 0.98595 1.21134 0.96834 0.99480 0.96381 1.20986 0.95742 0.95427 0.99992 1.21880 0.96548 0.96916 0.98876 1.96680 1.38736 1.96780 1.63000 0.92774 0.90860 0.94616 0.91975 0.84493 0.85480 0.85545 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.25 7.44 59.85 0.45 2.70 15 2 N -0.43 -10.99 3.02 -123.34 -0.37 -11.36 15 3 C -0.31 -8.62 9.31 -15.00 -0.14 -8.76 15 4 H 0.11 3.15 7.42 -52.49 -0.39 2.76 15 5 C 0.04 0.95 4.70 -17.45 -0.08 0.86 15 6 N -0.86 -22.33 11.24 55.50 0.62 -21.71 15 7 Si 0.92 20.30 29.64 -169.99 -5.04 15.26 15 8 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 11 C 0.46 11.67 6.65 -12.41 -0.08 11.59 15 12 O -0.57 -15.99 15.16 5.28 0.08 -15.91 15 13 C -0.06 -1.29 4.92 -104.95 -0.52 -1.80 15 14 C -0.09 -1.62 7.70 -39.17 -0.30 -1.92 15 15 C -0.11 -1.53 10.03 -39.64 -0.40 -1.93 15 16 C -0.12 -1.50 10.04 -39.49 -0.40 -1.89 15 17 C -0.10 -1.47 9.78 -39.61 -0.39 -1.86 15 18 C -0.06 -1.13 6.25 -39.08 -0.24 -1.38 15 19 Br -0.04 -0.71 31.57 -68.01 -2.15 -2.86 15 20 H 0.05 1.19 7.05 -51.93 -0.37 0.82 15 21 H 0.07 1.70 6.61 -51.93 -0.34 1.36 15 22 H 0.04 0.69 6.02 -51.93 -0.31 0.38 15 23 H 0.27 6.59 8.31 -40.82 -0.34 6.25 15 24 H 0.14 2.35 6.33 -52.49 -0.33 2.01 15 25 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 26 H 0.13 1.15 8.06 -52.48 -0.42 0.73 15 27 H 0.13 1.55 8.06 -52.49 -0.42 1.12 15 LS Contribution 254.67 15.07 3.84 3.84 Total: -1.00 -30.52 254.67 -7.27 -37.78 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -2.15 Total: -0.65 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.10 Total: -4.40 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.25 Total: -33.07 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.08 Total: -15.91 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.04 Total: 15.26 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.15 Total: -2.86 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.52 -7.27 -37.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.478 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds