Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36880 * 119.99947 * 2 1 4 4 H 1.07997 * 120.00031 * 193.21028 * 3 2 1 5 5 C 1.39045 * 120.00010 * 13.20148 * 3 2 1 6 6 N 1.31368 * 119.99827 * 29.00488 * 5 3 2 7 7 Si 1.86799 * 120.00320 * 209.00203 * 5 3 2 8 8 H 1.48504 * 109.47210 * 94.99703 * 7 5 3 9 9 H 1.48491 * 109.47360 * 214.99645 * 7 5 3 10 10 H 1.48502 * 109.46810 * 335.00024 * 7 5 3 11 11 C 1.34776 * 120.00178 * 179.97438 * 2 1 3 12 12 O 1.21595 * 119.99932 * 184.76217 * 11 2 1 13 13 C 1.47672 * 119.99878 * 4.76909 * 11 2 1 14 14 C 1.39693 * 120.15825 * 311.53542 * 13 11 2 15 15 C 1.37885 * 119.85448 * 179.97438 * 14 13 11 16 16 C 1.38425 * 120.17925 * 359.97438 * 15 14 13 17 17 C 1.38304 * 120.32718 * 359.97438 * 16 15 14 18 18 C 1.38090 * 120.13621 * 0.02562 * 17 16 15 19 19 Br 1.89099 * 120.08669 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.46749 * 267.78849 * 1 2 3 21 21 H 1.08994 * 109.46970 * 27.78721 * 1 2 3 22 22 H 1.08998 * 109.46851 * 147.78867 * 1 2 3 23 23 H 0.97007 * 119.99869 * 180.02562 * 6 5 3 24 24 H 1.07998 * 120.06975 * 359.95551 * 14 13 11 25 25 H 1.08002 * 119.90836 * 180.02562 * 15 14 13 26 26 H 1.08007 * 119.83813 * 180.02562 * 16 15 14 27 27 H 1.08000 * 119.92967 * 179.72192 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.2080 1.1978 -0.2137 5 6 1.4818 2.3737 0.2750 6 7 0.4252 2.3679 1.0556 7 14 2.0872 3.9782 -0.4654 8 1 1.3380 4.2600 -1.7163 9 1 1.8687 5.0834 0.5020 10 1 3.5362 3.8668 -0.7707 11 6 2.1390 -1.1672 0.0005 12 8 3.3518 -1.1689 0.0879 13 6 1.4044 -2.4439 -0.1052 14 6 0.2979 -2.6867 0.7120 15 6 -0.3837 -3.8808 0.6077 16 6 0.0255 -4.8382 -0.3046 17 6 1.1194 -4.6052 -1.1181 18 6 1.8117 -3.4140 -1.0247 19 35 3.3076 -3.0972 -2.1373 20 1 -0.3633 -0.0397 1.0269 21 1 -0.3633 0.9091 -0.4791 22 1 -0.3633 -0.8695 -0.5478 23 1 -0.0409 3.1968 1.2472 24 1 -0.0229 -1.9409 1.4243 25 1 -1.2396 -4.0693 1.2388 26 1 -0.5127 -5.7714 -0.3820 27 1 1.4358 -5.3584 -1.8245 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = -7.228581 kcal Electronic energy + Delta-G solvation = -14653.061734 eV Core-core repulsion = 12036.144603 eV Total energy + Delta-G solvation = -2616.917131 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03750 -39.08915 -36.71023 -33.90243 -33.19624 -32.05166 -30.14513 -28.23676 -26.78551 -24.24572 -23.26526 -21.05482 -19.02889 -18.23650 -17.27349 -16.72546 -16.53179 -16.00147 -15.49622 -15.22697 -14.50784 -14.36406 -14.08741 -13.59570 -13.44015 -13.33231 -12.68523 -12.52899 -12.35513 -12.16486 -12.05640 -11.74123 -11.22335 -10.91803 -10.33281 -9.86967 -9.77693 -9.65064 -8.49195 -5.90463 -0.03391 0.23980 0.75567 1.34701 1.40820 1.53055 2.01171 2.25056 2.67953 2.93220 3.10922 3.80290 3.90748 4.12303 4.37597 4.43039 4.50992 4.62709 4.86603 4.93535 5.19676 5.21613 5.33044 5.42181 5.44863 5.86547 6.01604 6.42296 7.11795 7.39202 7.99645 8.56735 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.007396 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.489445 B = 3785.020373 C = 4735.046853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.443 5.443 3 C -0.355 4.355 4 H 0.074 0.926 5 C 0.010 3.990 6 N -0.873 5.873 7 Si 0.980 3.020 8 H -0.264 1.264 9 H -0.271 1.271 10 H -0.276 1.276 11 C 0.458 3.542 12 O -0.612 6.612 13 C -0.102 4.102 14 C -0.103 4.103 15 C -0.099 4.099 16 C -0.093 4.093 17 C -0.097 4.097 18 C -0.080 4.080 19 Br -0.059 7.059 20 H 0.052 0.948 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.278 0.722 24 H 0.129 0.871 25 H 0.170 0.830 26 H 0.179 0.821 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.059 -13.425 -4.534 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.160 5.160 3 C -0.482 4.482 4 H 0.092 0.908 5 C -0.195 4.195 6 N -0.510 5.510 7 Si 0.803 3.197 8 H -0.189 1.189 9 H -0.196 1.196 10 H -0.201 1.201 11 C 0.248 3.752 12 O -0.499 6.499 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.161 4.161 19 Br 0.027 6.973 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.147 0.853 25 H 0.188 0.812 26 H 0.196 0.804 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.072 -13.116 -4.821 14.866 hybrid contribution 0.275 1.168 0.160 1.210 sum -4.797 -11.949 -4.661 13.693 Atomic orbital electron populations 1.21602 0.79509 1.00637 1.00878 1.43743 1.06667 1.04569 1.61029 1.19559 0.95432 0.83858 1.49346 0.90814 1.25951 0.96776 1.01997 0.94755 1.70157 1.21495 1.30180 1.29135 0.85138 0.78724 0.77030 0.78782 1.18899 1.19649 1.20089 1.18492 0.87456 0.84197 0.85045 1.90599 1.15083 1.87183 1.57045 1.20000 0.97564 0.94514 0.98639 1.21603 0.93256 0.99329 0.98053 1.21633 0.99959 0.91567 0.98489 1.21757 0.95089 1.00657 0.93613 1.21407 0.95577 0.94124 1.00549 1.22089 0.96776 0.98177 0.99013 1.96643 1.40208 1.97052 1.63375 0.92998 0.92406 0.91930 0.91163 0.85301 0.81219 0.80355 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.26 7.44 127.77 0.95 6.21 15 2 N -0.44 -23.84 3.02 -662.39 -2.00 -25.84 15 3 C -0.35 -20.72 9.31 84.10 0.78 -19.94 15 4 H 0.07 4.68 7.42 -2.91 -0.02 4.66 15 5 C 0.01 0.53 4.70 84.96 0.40 0.93 15 6 N -0.87 -45.87 11.24 21.68 0.24 -45.63 15 7 Si 0.98 42.34 29.64 68.60 2.03 44.37 15 8 H -0.26 -10.83 7.11 99.48 0.71 -10.13 15 9 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 11 C 0.46 24.11 6.65 86.74 0.58 24.69 15 12 O -0.61 -36.62 15.16 -4.01 -0.06 -36.68 15 13 C -0.10 -4.19 4.92 -20.07 -0.10 -4.29 15 14 C -0.10 -3.34 7.70 22.54 0.17 -3.17 15 15 C -0.10 -2.16 10.03 22.23 0.22 -1.94 15 16 C -0.09 -1.77 10.04 22.33 0.22 -1.54 15 17 C -0.10 -2.44 9.78 22.25 0.22 -2.22 15 18 C -0.08 -2.87 6.25 22.59 0.14 -2.73 15 19 Br -0.06 -2.24 31.57 -20.37 -0.64 -2.88 15 20 H 0.05 2.31 7.05 -2.39 -0.02 2.29 15 21 H 0.06 2.73 6.61 -2.39 -0.02 2.71 15 22 H 0.06 2.42 6.02 -2.39 -0.01 2.40 15 23 H 0.28 13.48 8.31 -92.70 -0.77 12.71 15 24 H 0.13 4.32 6.33 -2.91 -0.02 4.30 15 25 H 0.17 2.35 8.06 -2.91 -0.02 2.32 15 26 H 0.18 1.73 8.06 -2.91 -0.02 1.70 15 27 H 0.16 3.06 8.06 -2.91 -0.02 3.03 15 Total: -1.00 -70.97 254.67 4.36 -66.61 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.19 Total: 4.04 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 3.59 Total: -4.00 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.76 Total: -71.47 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.06 Total: -36.68 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 35 Polarization: -2.24 SS G_CDS: -0.64 Total: -2.88 kcal Total: -70.97 4.36 -66.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.385 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds