Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36877 * 119.99886 * 2 1 4 4 H 1.07997 * 119.99873 * 137.62988 * 3 2 1 5 5 C 1.39041 * 120.00053 * 317.61807 * 3 2 1 6 6 N 1.31370 * 119.99476 * 44.55211 * 5 3 2 7 7 Si 1.86804 * 120.00274 * 224.55125 * 5 3 2 8 8 H 1.48493 * 109.46989 * 60.00006 * 7 5 3 9 9 H 1.48504 * 109.46796 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46657 * 300.00141 * 7 5 3 11 11 C 1.34777 * 119.99919 * 179.97438 * 2 1 3 12 12 O 1.21597 * 120.00101 * 187.78095 * 11 2 1 13 13 C 1.47687 * 120.00308 * 7.78077 * 11 2 1 14 14 C 1.39670 * 120.14049 * 138.99177 * 13 11 2 15 15 C 1.37896 * 119.85443 * 180.30023 * 14 13 11 16 16 C 1.38492 * 120.13814 * 359.44935 * 15 14 13 17 17 Br 1.89097 * 119.85535 * 180.25770 * 16 15 14 18 18 C 1.38491 * 120.28691 * 0.55199 * 16 15 14 19 19 C 1.37889 * 120.14061 * 359.72898 * 18 16 15 20 20 H 1.09001 * 109.47021 * 278.67534 * 1 2 3 21 21 H 1.08998 * 109.47169 * 38.67895 * 1 2 3 22 22 H 1.08996 * 109.46838 * 158.67806 * 1 2 3 23 23 H 0.97008 * 119.99759 * 179.97438 * 6 5 3 24 24 H 1.07993 * 120.07573 * 0.02614 * 14 13 11 25 25 H 1.07989 * 119.92940 * 179.72183 * 15 14 13 26 26 H 1.08003 * 119.93127 * 179.70479 * 18 16 15 27 27 H 1.07998 * 120.07066 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.0178 1.3075 0.6303 5 6 1.7267 2.2322 -0.8117 6 7 0.4507 2.5373 -0.8787 7 14 2.9732 3.2047 -1.8067 8 1 3.6829 2.2922 -2.7387 9 1 2.2725 4.2591 -2.5830 10 1 3.9548 3.8362 -0.8888 11 6 2.1389 -1.1672 0.0005 12 8 3.3465 -1.1720 0.1431 13 6 1.4107 -2.4404 -0.1721 14 6 1.9436 -3.4495 -0.9774 15 6 1.2557 -4.6336 -1.1394 16 6 0.0445 -4.8277 -0.4964 17 35 -0.8885 -6.4574 -0.7184 18 6 -0.4892 -3.8311 0.3035 19 6 0.1859 -2.6403 0.4690 20 1 -0.3633 0.1550 1.0159 21 1 -0.3633 0.8022 -0.6422 22 1 -0.3633 -0.9573 -0.3737 23 1 0.1558 3.2678 -1.4447 24 1 2.8901 -3.3011 -1.4757 25 1 1.6644 -5.4129 -1.7654 26 1 -1.4365 -3.9868 0.7983 27 1 -0.2316 -1.8637 1.0927 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049211.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = 16.235356 kcal Electronic energy + Delta-G solvation = -14394.530366 eV Core-core repulsion = 11778.630707 eV Total energy + Delta-G solvation = -2615.899659 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.59833 -37.56266 -34.79884 -32.53643 -31.75982 -30.83151 -29.21019 -26.41365 -24.89686 -22.48690 -22.38414 -19.56939 -17.26664 -16.47506 -15.93042 -15.16623 -14.79247 -14.41765 -13.99093 -13.86739 -13.33662 -12.97982 -12.66444 -12.14296 -11.76607 -11.53859 -11.27154 -11.06963 -10.82238 -10.58810 -10.46626 -10.32113 -10.17993 -8.80579 -8.72587 -8.61250 -8.34274 -7.75700 -6.75072 -3.96500 1.08924 1.50960 1.67808 3.12524 3.22788 3.29404 3.54406 3.98861 4.21656 4.54967 4.86425 4.98154 5.03719 5.48938 5.52615 5.62743 5.83658 6.11848 6.24106 6.34895 6.41535 6.58075 6.71720 6.95970 7.10252 7.52057 8.19418 8.40645 9.02479 9.22126 9.88559 10.27511 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.045371 B = 0.004255 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.983354 B = 6578.316563 C = 6810.452877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.428 5.428 3 C -0.352 4.352 4 H 0.098 0.902 5 C 0.077 3.923 6 N -0.819 5.819 7 Si 0.890 3.110 8 H -0.269 1.269 9 H -0.285 1.285 10 H -0.268 1.268 11 C 0.479 3.521 12 O -0.578 6.578 13 C -0.074 4.074 14 C -0.077 4.077 15 C -0.098 4.098 16 C -0.092 4.092 17 Br -0.066 7.066 18 C -0.099 4.099 19 C -0.099 4.099 20 H 0.038 0.962 21 H 0.116 0.884 22 H 0.050 0.950 23 H 0.275 0.725 24 H 0.136 0.864 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 -14.037 -1.115 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.146 5.146 3 C -0.477 4.477 4 H 0.116 0.884 5 C -0.133 4.133 6 N -0.451 5.451 7 Si 0.714 3.286 8 H -0.194 1.194 9 H -0.211 1.211 10 H -0.193 1.193 11 C 0.268 3.732 12 O -0.463 6.463 13 C -0.078 4.078 14 C -0.097 4.097 15 C -0.118 4.118 16 C -0.172 4.172 17 Br 0.019 6.981 18 C -0.119 4.119 19 C -0.119 4.119 20 H 0.056 0.944 21 H 0.134 0.866 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.154 0.846 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.646 -14.438 -1.186 15.938 hybrid contribution 0.496 0.883 -0.417 1.095 sum -6.150 -13.555 -1.603 14.971 Atomic orbital electron populations 1.22977 0.82442 1.02963 1.01895 1.43334 1.05061 1.04616 1.61577 1.19075 1.12536 0.90085 1.25971 0.88389 1.25545 0.95715 0.96778 0.95292 1.70020 1.16487 1.26037 1.32590 0.86613 0.82476 0.78472 0.81046 1.19419 1.21087 1.19305 1.18009 0.87132 0.83055 0.85026 1.90627 1.13948 1.86583 1.55180 1.20560 0.94693 0.95839 0.96712 1.21178 0.99642 0.91582 0.97277 1.20972 0.93448 0.97933 0.99398 1.21775 0.97731 0.93060 1.04635 1.96637 1.75864 1.28510 1.97114 1.20986 1.00255 0.92412 0.98225 1.21707 0.94090 0.96754 0.99360 0.94399 0.86595 0.93202 0.91418 0.84570 0.85086 0.85081 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 8.58 59.85 0.51 1.38 15 2 N -0.43 -10.85 2.99 -123.33 -0.37 -11.22 15 3 C -0.35 -9.66 8.74 -15.00 -0.13 -9.79 15 4 H 0.10 2.84 7.94 -52.49 -0.42 2.43 15 5 C 0.08 1.99 5.32 -17.45 -0.09 1.90 15 6 N -0.82 -20.55 10.81 55.50 0.60 -19.95 15 7 Si 0.89 20.00 29.69 -169.99 -5.05 14.96 15 8 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 9 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15 10 H -0.27 -6.00 7.11 56.52 0.40 -5.59 15 11 C 0.48 11.82 7.27 -12.40 -0.09 11.73 15 12 O -0.58 -16.22 16.84 5.28 0.09 -16.13 15 13 C -0.07 -1.46 5.30 -104.97 -0.56 -2.01 15 14 C -0.08 -1.33 9.65 -39.17 -0.38 -1.71 15 15 C -0.10 -1.42 9.77 -39.61 -0.39 -1.80 15 16 C -0.09 -1.30 6.23 -39.39 -0.25 -1.55 15 17 Br -0.07 -0.79 33.69 -68.01 -2.29 -3.08 15 18 C -0.10 -1.41 9.77 -39.62 -0.39 -1.80 15 19 C -0.10 -1.66 7.35 -39.17 -0.29 -1.95 15 20 H 0.04 0.77 7.79 -51.93 -0.40 0.37 15 21 H 0.12 2.72 5.14 -51.93 -0.27 2.45 15 22 H 0.05 0.94 4.59 -51.93 -0.24 0.70 15 23 H 0.28 6.42 8.31 -40.82 -0.34 6.08 15 24 H 0.14 2.33 8.06 -52.49 -0.42 1.90 15 25 H 0.13 1.58 8.06 -52.49 -0.42 1.15 15 26 H 0.13 1.55 8.06 -52.48 -0.42 1.12 15 27 H 0.14 2.29 5.74 -52.49 -0.30 1.98 15 LS Contribution 256.99 15.07 3.87 3.87 Total: -1.00 -28.95 256.99 -7.22 -36.17 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -2.03 Total: 0.98 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.04 Total: -5.60 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.23 Total: -31.17 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.05 Total: 14.96 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -2.29 Total: -3.08 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.95 -7.22 -36.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049211.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.404 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds