Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36877 * 119.99886 * 2 1 4 4 H 1.07997 * 119.99873 * 137.62988 * 3 2 1 5 5 C 1.39041 * 120.00053 * 317.61807 * 3 2 1 6 6 N 1.31370 * 119.99476 * 44.55211 * 5 3 2 7 7 Si 1.86804 * 120.00274 * 224.55125 * 5 3 2 8 8 H 1.48493 * 109.46989 * 60.00006 * 7 5 3 9 9 H 1.48504 * 109.46796 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46657 * 300.00141 * 7 5 3 11 11 C 1.34777 * 119.99919 * 179.97438 * 2 1 3 12 12 O 1.21597 * 120.00101 * 187.78095 * 11 2 1 13 13 C 1.47687 * 120.00308 * 7.78077 * 11 2 1 14 14 C 1.39670 * 120.14049 * 138.99177 * 13 11 2 15 15 C 1.37896 * 119.85443 * 180.30023 * 14 13 11 16 16 C 1.38492 * 120.13814 * 359.44935 * 15 14 13 17 17 Br 1.89097 * 119.85535 * 180.25770 * 16 15 14 18 18 C 1.38491 * 120.28691 * 0.55199 * 16 15 14 19 19 C 1.37889 * 120.14061 * 359.72898 * 18 16 15 20 20 H 1.09001 * 109.47021 * 278.67534 * 1 2 3 21 21 H 1.08998 * 109.47169 * 38.67895 * 1 2 3 22 22 H 1.08996 * 109.46838 * 158.67806 * 1 2 3 23 23 H 0.97008 * 119.99759 * 179.97438 * 6 5 3 24 24 H 1.07993 * 120.07573 * 0.02614 * 14 13 11 25 25 H 1.07989 * 119.92940 * 179.72183 * 15 14 13 26 26 H 1.08003 * 119.93127 * 179.70479 * 18 16 15 27 27 H 1.07998 * 120.07066 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.0178 1.3075 0.6303 5 6 1.7267 2.2322 -0.8117 6 7 0.4507 2.5373 -0.8787 7 14 2.9732 3.2047 -1.8067 8 1 3.6829 2.2922 -2.7387 9 1 2.2725 4.2591 -2.5830 10 1 3.9548 3.8362 -0.8888 11 6 2.1389 -1.1672 0.0005 12 8 3.3465 -1.1720 0.1431 13 6 1.4107 -2.4404 -0.1721 14 6 1.9436 -3.4495 -0.9774 15 6 1.2557 -4.6336 -1.1394 16 6 0.0445 -4.8277 -0.4964 17 35 -0.8885 -6.4574 -0.7184 18 6 -0.4892 -3.8311 0.3035 19 6 0.1859 -2.6403 0.4690 20 1 -0.3633 0.1550 1.0159 21 1 -0.3633 0.8022 -0.6422 22 1 -0.3633 -0.9573 -0.3737 23 1 0.1558 3.2678 -1.4447 24 1 2.8901 -3.3011 -1.4757 25 1 1.6644 -5.4129 -1.7654 26 1 -1.4365 -3.9868 0.7983 27 1 -0.2316 -1.8637 1.0927 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049211.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = -0.603268 kcal Electronic energy + Delta-G solvation = -14395.260543 eV Core-core repulsion = 11778.630707 eV Total energy + Delta-G solvation = -2616.629836 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15728 -39.16400 -36.75355 -34.24587 -33.20662 -32.14571 -30.48856 -28.21566 -26.70882 -23.94904 -23.71204 -21.20459 -19.16927 -18.14689 -17.42587 -16.68040 -16.47426 -16.20851 -15.62803 -15.39434 -14.61385 -14.46868 -14.22801 -13.91245 -13.63599 -13.22930 -12.79008 -12.58710 -12.41235 -12.15124 -12.11182 -11.73937 -11.27075 -10.64523 -10.53714 -10.06646 -9.69148 -9.67741 -8.69720 -6.00887 -0.23151 0.27006 0.55193 1.29745 1.39922 1.48109 1.94934 2.16762 2.57693 2.70119 3.07406 3.74934 3.88041 3.92486 4.25203 4.35470 4.52378 4.63873 4.85124 4.93236 5.08848 5.10261 5.22100 5.38926 5.60537 5.68706 6.14910 6.48014 7.05370 7.31227 7.96345 8.33053 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.045371 B = 0.004255 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.983354 B = 6578.316563 C = 6810.452877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.442 5.442 3 C -0.401 4.401 4 H 0.064 0.936 5 C 0.054 3.946 6 N -0.825 5.825 7 Si 0.948 3.052 8 H -0.283 1.283 9 H -0.261 1.261 10 H -0.268 1.268 11 C 0.471 3.529 12 O -0.628 6.628 13 C -0.104 4.104 14 C -0.085 4.085 15 C -0.087 4.087 16 C -0.088 4.088 17 Br -0.033 7.033 18 C -0.088 4.088 19 C -0.099 4.099 20 H 0.045 0.955 21 H 0.100 0.900 22 H 0.079 0.921 23 H 0.285 0.715 24 H 0.128 0.872 25 H 0.160 0.840 26 H 0.164 0.836 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -15.690 -1.940 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.159 5.159 3 C -0.526 4.526 4 H 0.082 0.918 5 C -0.157 4.157 6 N -0.456 5.456 7 Si 0.770 3.230 8 H -0.209 1.209 9 H -0.185 1.185 10 H -0.193 1.193 11 C 0.262 3.738 12 O -0.517 6.517 13 C -0.108 4.108 14 C -0.105 4.105 15 C -0.107 4.107 16 C -0.168 4.168 17 Br 0.052 6.948 18 C -0.107 4.107 19 C -0.118 4.118 20 H 0.064 0.936 21 H 0.118 0.882 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.146 0.854 25 H 0.178 0.822 26 H 0.181 0.819 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.563 -16.084 -2.012 18.332 hybrid contribution 0.983 1.209 -0.149 1.566 sum -7.580 -14.875 -2.161 16.834 Atomic orbital electron populations 1.22951 0.80432 1.03969 1.02158 1.43510 1.06396 1.04293 1.61713 1.18889 1.13041 0.92069 1.28607 0.91797 1.26042 0.97359 0.97281 0.95011 1.70007 1.17059 1.26325 1.32235 0.85754 0.80391 0.77498 0.79351 1.20870 1.18539 1.19320 1.18807 0.86952 0.84589 0.83497 1.90562 1.16285 1.87703 1.57101 1.20240 0.96281 0.94276 1.00000 1.21211 0.99788 0.92238 0.97230 1.21206 0.93241 0.97181 0.99076 1.22078 0.97441 0.94182 1.03066 1.96696 1.74972 1.26194 1.96934 1.21283 1.00894 0.91065 0.97487 1.21709 0.93002 0.98092 0.99030 0.93633 0.88201 0.90292 0.90357 0.85360 0.82224 0.81858 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.04 8.58 127.77 1.10 3.13 15 2 N -0.44 -23.23 2.99 -662.37 -1.98 -25.21 15 3 C -0.40 -23.10 8.74 84.10 0.73 -22.36 15 4 H 0.06 4.00 7.94 -2.91 -0.02 3.98 15 5 C 0.05 2.84 5.32 84.95 0.45 3.29 15 6 N -0.82 -41.35 10.81 21.68 0.23 -41.11 15 7 Si 0.95 41.68 29.69 68.60 2.04 43.72 15 8 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 9 H -0.26 -10.40 7.11 99.48 0.71 -9.70 15 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 11 C 0.47 24.24 7.27 86.74 0.63 24.87 15 12 O -0.63 -37.34 16.84 -4.02 -0.07 -37.40 15 13 C -0.10 -4.11 5.30 -20.09 -0.11 -4.22 15 14 C -0.08 -2.89 9.65 22.53 0.22 -2.67 15 15 C -0.09 -2.30 9.77 22.25 0.22 -2.08 15 16 C -0.09 -2.16 6.23 22.39 0.14 -2.02 15 17 Br -0.03 -0.66 33.69 -20.37 -0.69 -1.34 15 18 C -0.09 -2.20 9.77 22.25 0.22 -1.98 15 19 C -0.10 -3.14 7.35 22.54 0.17 -2.97 15 20 H 0.05 1.86 7.79 -2.39 -0.02 1.84 15 21 H 0.10 4.70 5.14 -2.39 -0.01 4.69 15 22 H 0.08 2.91 4.59 -2.39 -0.01 2.90 15 23 H 0.29 13.04 8.31 -92.70 -0.77 12.27 15 24 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15 25 H 0.16 3.25 8.06 -2.92 -0.02 3.23 15 26 H 0.16 3.06 8.06 -2.91 -0.02 3.04 15 27 H 0.15 4.48 5.74 -2.91 -0.02 4.46 15 Total: -1.00 -65.04 256.99 4.50 -60.54 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.20 Total: 7.82 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 3.76 Total: -7.01 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -1.75 Total: -66.33 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.07 Total: -37.40 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.04 Total: 43.72 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -0.69 Total: -1.34 kcal Total: -65.04 4.50 -60.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049211.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.935 kcal (2) G-P(sol) polarization free energy of solvation -65.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds