Wall clock time and date at job start Tue Mar 31 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36870 * 119.99908 * 2 1 4 4 H 1.08000 * 119.99932 * 201.51501 * 3 2 1 5 5 C 1.39053 * 120.00000 * 21.52099 * 3 2 1 6 6 N 1.31365 * 120.00131 * 13.36692 * 5 3 2 7 7 Si 1.86800 * 119.99922 * 193.37236 * 5 3 2 8 8 H 1.48498 * 109.47059 * 59.99477 * 7 5 3 9 9 H 1.48498 * 109.47199 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47064 * 299.99813 * 7 5 3 11 11 C 1.34770 * 119.99802 * 179.97438 * 2 1 3 12 12 O 1.21594 * 119.99688 * 184.66148 * 11 2 1 13 13 C 1.47731 * 120.00442 * 4.66701 * 11 2 1 14 14 C 1.39664 * 120.14790 * 138.68192 * 13 11 2 15 15 C 1.37923 * 119.86883 * 180.02562 * 14 13 11 16 16 C 1.38380 * 120.16009 * 359.97438 * 15 14 13 17 17 C 1.38442 * 120.29670 * 0.04262 * 16 15 14 18 18 Br 1.89092 * 119.93451 * 179.97438 * 17 16 15 19 19 C 1.38056 * 120.13144 * 359.94879 * 17 16 15 20 20 H 1.08994 * 109.47377 * 264.77189 * 1 2 3 21 21 H 1.09006 * 109.47366 * 24.77543 * 1 2 3 22 22 H 1.09007 * 109.46988 * 144.77247 * 1 2 3 23 23 H 0.96995 * 119.99854 * 180.02562 * 6 5 3 24 24 H 1.08005 * 120.06721 * 0.02562 * 14 13 11 25 25 H 1.08001 * 119.91627 * 180.02562 * 15 14 13 26 26 H 1.07994 * 119.84956 * 180.02562 * 16 15 14 27 27 H 1.07994 * 120.08228 * 180.29740 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1729 1.2179 -0.3430 5 6 1.5268 2.3476 0.4418 6 7 0.3911 2.2756 1.0981 7 14 2.3053 4.0112 0.1017 8 1 2.4328 4.2076 -1.3647 9 1 1.4506 5.0835 0.6718 10 1 3.6510 4.0652 0.7273 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1688 0.0861 13 6 1.4039 -2.4445 -0.1030 14 6 1.8954 -3.4732 -0.9098 15 6 1.2043 -4.6631 -1.0026 16 6 0.0264 -4.8398 -0.2983 17 6 -0.4671 -3.8246 0.5032 18 35 -2.0781 -4.0768 1.4607 19 6 0.2149 -2.6286 0.6052 20 1 -0.3634 -0.0936 1.0233 21 1 -0.3634 0.9331 -0.4307 22 1 -0.3633 -0.8395 -0.5928 23 1 -0.0433 3.0864 1.4059 24 1 2.8148 -3.3371 -1.4599 25 1 1.5839 -5.4592 -1.6260 26 1 -0.5104 -5.7738 -0.3743 27 1 -0.1683 -1.8389 1.2343 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049218.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:21 Heat of formation + Delta-G solvation = 7.031972 kcal Electronic energy + Delta-G solvation = -14484.326856 eV Core-core repulsion = 11868.028109 eV Total energy + Delta-G solvation = -2616.298747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54924 -37.57711 -34.82274 -32.11369 -32.05010 -30.61592 -28.97233 -26.41815 -25.06033 -22.78162 -22.04572 -19.38225 -17.17000 -16.54954 -16.07278 -15.07330 -15.03668 -14.19495 -13.95536 -13.70563 -13.22027 -12.90937 -12.68019 -11.85786 -11.79213 -11.35313 -11.22776 -10.94831 -10.73104 -10.65860 -10.45231 -10.37797 -10.18436 -9.09228 -8.74820 -8.56302 -8.41102 -7.81645 -6.44995 -3.95745 1.22155 1.41832 1.75640 3.13232 3.19685 3.23284 3.54842 4.03757 4.18548 4.70908 4.96249 5.07315 5.14769 5.41926 5.57739 5.60830 5.86628 6.05760 6.29681 6.33206 6.48903 6.70338 6.75303 6.96809 7.13386 7.45255 8.00501 8.37139 9.06299 9.28090 9.86116 10.58666 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.005655 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.062343 B = 4950.555186 C = 5866.947457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.426 5.426 3 C -0.306 4.306 4 H 0.102 0.898 5 C 0.032 3.968 6 N -0.873 5.873 7 Si 0.931 3.069 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.271 1.271 11 C 0.470 3.530 12 O -0.586 6.586 13 C -0.084 4.084 14 C -0.067 4.067 15 C -0.124 4.124 16 C -0.093 4.093 17 C -0.097 4.097 18 Br -0.061 7.061 19 C -0.072 4.072 20 H 0.054 0.946 21 H 0.081 0.919 22 H 0.032 0.968 23 H 0.272 0.728 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 -11.957 -1.737 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.143 5.143 3 C -0.434 4.434 4 H 0.120 0.880 5 C -0.172 4.172 6 N -0.512 5.512 7 Si 0.757 3.243 8 H -0.197 1.197 9 H -0.208 1.208 10 H -0.196 1.196 11 C 0.258 3.742 12 O -0.472 6.472 13 C -0.088 4.088 14 C -0.087 4.087 15 C -0.142 4.142 16 C -0.114 4.114 17 C -0.176 4.176 18 Br 0.024 6.976 19 C -0.092 4.092 20 H 0.073 0.927 21 H 0.100 0.900 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.582 -11.844 -1.238 14.117 hybrid contribution 0.434 0.887 -0.210 1.009 sum -7.148 -10.957 -1.448 13.163 Atomic orbital electron populations 1.21836 0.81060 1.00802 1.00358 1.43526 1.05717 1.04692 1.60317 1.19693 0.99249 0.83406 1.41031 0.88012 1.25403 0.96462 1.00310 0.95057 1.69977 1.17480 1.29790 1.33916 0.85923 0.79090 0.80362 0.78945 1.19734 1.20783 1.19588 1.17851 0.87411 0.82878 0.86024 1.90622 1.13434 1.86531 1.56611 1.20361 0.94459 0.96511 0.97497 1.21367 0.99111 0.91938 0.96236 1.21039 0.95176 0.97668 1.00360 1.21092 0.96416 0.97805 0.96045 1.21641 0.95310 0.97743 1.02869 1.96655 1.29438 1.97319 1.74149 1.21720 0.93498 0.95902 0.98110 0.92718 0.89995 0.94977 0.91817 0.84924 0.85153 0.85378 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.31 7.22 59.85 0.43 2.74 15 2 N -0.43 -11.00 3.01 -123.31 -0.37 -11.37 15 3 C -0.31 -8.44 9.27 -15.00 -0.14 -8.58 15 4 H 0.10 2.91 7.44 -52.49 -0.39 2.52 15 5 C 0.03 0.83 5.04 -17.45 -0.09 0.74 15 6 N -0.87 -22.74 10.69 55.50 0.59 -22.15 15 7 Si 0.93 20.28 29.57 -169.99 -5.03 15.25 15 8 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 11 C 0.47 11.79 7.28 -12.38 -0.09 11.70 15 12 O -0.59 -16.63 16.66 5.28 0.09 -16.54 15 13 C -0.08 -1.68 5.16 -104.97 -0.54 -2.23 15 14 C -0.07 -1.14 9.65 -39.16 -0.38 -1.51 15 15 C -0.12 -1.66 10.03 -39.64 -0.40 -2.06 15 16 C -0.09 -1.25 9.78 -39.45 -0.39 -1.63 15 17 C -0.10 -1.48 6.22 -39.57 -0.25 -1.72 15 18 Br -0.06 -0.82 33.69 -68.01 -2.29 -3.11 15 19 C -0.07 -1.29 7.34 -39.13 -0.29 -1.58 15 20 H 0.05 1.23 6.64 -51.93 -0.34 0.89 15 21 H 0.08 1.93 6.53 -51.93 -0.34 1.59 15 22 H 0.03 0.63 5.98 -51.93 -0.31 0.32 15 23 H 0.27 6.68 8.31 -40.82 -0.34 6.34 15 24 H 0.13 2.19 8.06 -52.48 -0.42 1.77 15 25 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 26 H 0.13 1.37 8.06 -52.49 -0.42 0.94 15 27 H 0.15 2.72 5.52 -52.49 -0.29 2.43 15 LS Contribution 256.52 15.07 3.87 3.87 Total: -1.00 -29.73 256.52 -7.34 -37.07 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -2.08 Total: 1.12 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.12 Total: -4.13 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.22 Total: -33.52 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.09 Total: -16.54 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -2.29 Total: -3.11 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.73 -7.34 -37.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049218.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.101 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds