Wall clock time and date at job start Tue Mar 31 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36870 * 119.99908 * 2 1 4 4 H 1.08000 * 119.99932 * 201.51501 * 3 2 1 5 5 C 1.39053 * 120.00000 * 21.52099 * 3 2 1 6 6 N 1.31365 * 120.00131 * 13.36692 * 5 3 2 7 7 Si 1.86800 * 119.99922 * 193.37236 * 5 3 2 8 8 H 1.48498 * 109.47059 * 59.99477 * 7 5 3 9 9 H 1.48498 * 109.47199 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47064 * 299.99813 * 7 5 3 11 11 C 1.34770 * 119.99802 * 179.97438 * 2 1 3 12 12 O 1.21594 * 119.99688 * 184.66148 * 11 2 1 13 13 C 1.47731 * 120.00442 * 4.66701 * 11 2 1 14 14 C 1.39664 * 120.14790 * 138.68192 * 13 11 2 15 15 C 1.37923 * 119.86883 * 180.02562 * 14 13 11 16 16 C 1.38380 * 120.16009 * 359.97438 * 15 14 13 17 17 C 1.38442 * 120.29670 * 0.04262 * 16 15 14 18 18 Br 1.89092 * 119.93451 * 179.97438 * 17 16 15 19 19 C 1.38056 * 120.13144 * 359.94879 * 17 16 15 20 20 H 1.08994 * 109.47377 * 264.77189 * 1 2 3 21 21 H 1.09006 * 109.47366 * 24.77543 * 1 2 3 22 22 H 1.09007 * 109.46988 * 144.77247 * 1 2 3 23 23 H 0.96995 * 119.99854 * 180.02562 * 6 5 3 24 24 H 1.08005 * 120.06721 * 0.02562 * 14 13 11 25 25 H 1.08001 * 119.91627 * 180.02562 * 15 14 13 26 26 H 1.07994 * 119.84956 * 180.02562 * 16 15 14 27 27 H 1.07994 * 120.08228 * 180.29740 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1729 1.2179 -0.3430 5 6 1.5268 2.3476 0.4418 6 7 0.3911 2.2756 1.0981 7 14 2.3053 4.0112 0.1017 8 1 2.4328 4.2076 -1.3647 9 1 1.4506 5.0835 0.6718 10 1 3.6510 4.0652 0.7273 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1688 0.0861 13 6 1.4039 -2.4445 -0.1030 14 6 1.8954 -3.4732 -0.9098 15 6 1.2043 -4.6631 -1.0026 16 6 0.0264 -4.8398 -0.2983 17 6 -0.4671 -3.8246 0.5032 18 35 -2.0781 -4.0768 1.4607 19 6 0.2149 -2.6286 0.6052 20 1 -0.3634 -0.0936 1.0233 21 1 -0.3634 0.9331 -0.4307 22 1 -0.3633 -0.8395 -0.5928 23 1 -0.0433 3.0864 1.4059 24 1 2.8148 -3.3371 -1.4599 25 1 1.5839 -5.4592 -1.6260 26 1 -0.5104 -5.7738 -0.3743 27 1 -0.1683 -1.8389 1.2343 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049218.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:21 Heat of formation + Delta-G solvation = -10.806473 kcal Electronic energy + Delta-G solvation = -14485.100389 eV Core-core repulsion = 11868.028109 eV Total energy + Delta-G solvation = -2617.072280 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.14343 -39.18857 -36.82318 -33.93959 -33.33985 -32.10166 -30.19199 -28.30772 -26.90820 -24.32740 -23.33357 -21.05589 -19.11332 -18.22167 -17.55386 -16.85641 -16.49888 -15.99238 -15.56975 -15.21440 -14.59909 -14.43633 -14.18042 -13.69652 -13.50083 -13.18802 -12.71236 -12.57777 -12.44361 -12.19160 -12.07800 -11.83378 -11.30945 -11.05219 -10.56524 -9.93430 -9.85318 -9.70751 -8.43175 -6.05163 -0.08478 0.15315 0.57696 1.38593 1.40030 1.51154 1.93611 2.23024 2.64048 2.94751 3.06962 3.72616 3.85971 4.08182 4.22627 4.34915 4.51121 4.59286 4.79736 4.91309 5.09806 5.23521 5.27856 5.36299 5.39574 5.74886 6.00193 6.38029 7.05019 7.31677 7.89362 8.59485 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.005655 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.062343 B = 4950.555186 C = 5866.947457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.443 5.443 3 C -0.350 4.350 4 H 0.077 0.923 5 C 0.001 3.999 6 N -0.889 5.889 7 Si 0.995 3.005 8 H -0.265 1.265 9 H -0.267 1.267 10 H -0.275 1.275 11 C 0.462 3.538 12 O -0.633 6.633 13 C -0.116 4.116 14 C -0.074 4.074 15 C -0.103 4.103 16 C -0.073 4.073 17 C -0.102 4.102 18 Br -0.040 7.040 19 C -0.079 4.079 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.278 0.722 24 H 0.129 0.871 25 H 0.177 0.823 26 H 0.169 0.831 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 -13.742 -2.345 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.159 5.159 3 C -0.478 4.478 4 H 0.095 0.905 5 C -0.202 4.202 6 N -0.526 5.526 7 Si 0.818 3.182 8 H -0.189 1.189 9 H -0.191 1.191 10 H -0.201 1.201 11 C 0.252 3.748 12 O -0.523 6.523 13 C -0.120 4.120 14 C -0.093 4.093 15 C -0.122 4.122 16 C -0.092 4.092 17 C -0.181 4.181 18 Br 0.045 6.955 19 C -0.100 4.100 20 H 0.066 0.934 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.147 0.853 25 H 0.194 0.806 26 H 0.186 0.814 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.010 -13.640 -1.843 16.451 hybrid contribution 0.797 1.276 0.010 1.504 sum -8.213 -12.365 -1.833 14.957 Atomic orbital electron populations 1.21709 0.79378 1.00946 1.00251 1.43757 1.06855 1.04646 1.60592 1.19686 0.99126 0.85245 1.43749 0.90541 1.26187 0.96861 1.03096 0.94032 1.70040 1.18036 1.30992 1.33564 0.84975 0.78039 0.76128 0.79088 1.18944 1.19117 1.20050 1.18711 0.87267 0.84467 0.84324 1.90556 1.15644 1.87682 1.58375 1.19998 0.95938 0.95037 1.01034 1.21500 0.99430 0.92554 0.95853 1.21472 0.94225 0.96890 0.99586 1.21618 0.95824 0.98305 0.93487 1.21803 0.95908 0.97148 1.03241 1.96682 1.27843 1.97079 1.73855 1.21496 0.93268 0.97001 0.98193 0.93351 0.91528 0.92403 0.91181 0.85295 0.80582 0.81377 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.54 7.22 127.77 0.92 6.47 15 2 N -0.44 -23.91 3.01 -662.31 -2.00 -25.91 15 3 C -0.35 -20.30 9.27 84.10 0.78 -19.52 15 4 H 0.08 4.69 7.44 -2.91 -0.02 4.67 15 5 C 0.00 0.07 5.04 84.96 0.43 0.49 15 6 N -0.89 -46.98 10.69 21.68 0.23 -46.75 15 7 Si 1.00 42.12 29.57 68.60 2.03 44.15 15 8 H -0.26 -10.83 7.11 99.48 0.71 -10.13 15 9 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 11 C 0.46 24.32 7.28 86.75 0.63 24.95 15 12 O -0.63 -38.05 16.66 -4.01 -0.07 -38.12 15 13 C -0.12 -4.71 5.16 -20.09 -0.10 -4.81 15 14 C -0.07 -2.41 9.65 22.54 0.22 -2.19 15 15 C -0.10 -2.34 10.03 22.23 0.22 -2.12 15 16 C -0.07 -1.60 9.78 22.35 0.22 -1.38 15 17 C -0.10 -2.84 6.22 22.28 0.14 -2.70 15 18 Br -0.04 -0.97 33.69 -20.37 -0.69 -1.65 15 19 C -0.08 -2.81 7.34 22.56 0.17 -2.64 15 20 H 0.05 2.26 6.64 -2.39 -0.02 2.24 15 21 H 0.07 3.23 6.53 -2.38 -0.02 3.21 15 22 H 0.06 2.32 5.98 -2.38 -0.01 2.30 15 23 H 0.28 13.66 8.31 -92.71 -0.77 12.89 15 24 H 0.13 4.23 8.06 -2.91 -0.02 4.21 15 25 H 0.18 2.46 8.06 -2.91 -0.02 2.43 15 26 H 0.17 2.48 8.06 -2.91 -0.02 2.46 15 27 H 0.13 4.91 5.52 -2.91 -0.02 4.90 15 Total: -1.00 -67.79 256.52 4.33 -63.46 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.20 Total: 8.28 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 3.62 Total: -3.47 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -1.76 Total: -72.66 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.07 Total: -38.12 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -0.69 Total: -1.65 kcal Total: -67.79 4.33 -63.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049218.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.656 kcal (2) G-P(sol) polarization free energy of solvation -67.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds