Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47175 * 2 1 4 4 C 1.36935 * 120.00487 * 272.11936 * 3 2 1 5 5 H 1.07994 * 120.00778 * 186.00225 * 4 3 2 6 6 C 1.38811 * 119.99443 * 6.00585 * 4 3 2 7 7 N 1.31622 * 120.00228 * 14.04973 * 6 4 3 8 8 Si 1.86804 * 119.99981 * 194.04529 * 6 4 3 9 9 H 1.48500 * 109.47290 * 90.00084 * 8 6 4 10 10 H 1.48504 * 109.47171 * 210.00017 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00149 * 8 6 4 12 12 C 1.46502 * 120.00140 * 92.12356 * 3 2 1 13 13 C 1.50705 * 109.47355 * 97.86407 * 12 3 2 14 14 C 1.38238 * 120.00343 * 93.21796 * 13 12 3 15 15 C 1.38215 * 120.01082 * 179.70267 * 14 13 12 16 16 C 1.38266 * 120.02032 * 0.27325 * 15 14 13 17 17 C 1.38196 * 120.00734 * 0.02562 * 16 15 14 18 18 C 1.38305 * 120.00461 * 273.47076 * 13 12 3 19 19 Br 1.89097 * 120.01270 * 0.04558 * 18 13 12 20 20 H 1.09002 * 109.47246 * 59.99584 * 1 2 3 21 21 H 1.08997 * 109.47508 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47367 * 299.99828 * 1 2 3 23 23 H 1.08997 * 109.47499 * 239.99990 * 2 1 3 24 24 H 1.09002 * 109.47246 * 120.00416 * 2 1 3 25 25 H 0.97005 * 119.99823 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.47085 * 337.86713 * 12 3 2 27 27 H 1.09003 * 109.47294 * 217.86748 * 12 3 2 28 28 H 1.08005 * 119.99329 * 359.97438 * 14 13 12 29 29 H 1.07998 * 119.99195 * 180.25434 * 15 14 13 30 30 H 1.07994 * 119.99866 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.00742 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2052 2.0414 -1.1850 5 1 2.6558 3.0228 -1.1913 6 6 1.8154 1.4491 -2.3784 7 7 1.0267 0.3955 -2.3634 8 14 2.4102 2.1474 -4.0057 9 1 3.6883 1.4946 -4.3870 10 1 1.3915 1.8924 -5.0557 11 1 2.6236 3.6106 -3.8680 12 6 2.3068 2.0562 1.2679 13 6 3.7845 1.9787 1.5534 14 6 4.6201 3.0057 1.1559 15 6 5.9745 2.9377 1.4231 16 6 6.4951 1.8399 2.0830 17 6 5.6614 0.8098 2.4752 18 6 4.3056 0.8777 2.2084 19 35 3.1644 -0.5314 2.7448 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 0.7547 -0.0186 -3.1974 26 1 1.7554 1.5694 2.0723 27 1 2.0040 3.1011 1.2003 28 1 4.2139 3.8635 0.6404 29 1 6.6264 3.7422 1.1161 30 1 7.5535 1.7869 2.2912 31 1 6.0680 -0.0475 2.9910 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061136.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = 62.341124 kcal Electronic energy + Delta-G solvation = -15116.878233 eV Core-core repulsion = 12638.810965 eV Total energy + Delta-G solvation = -2478.067268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.95612 -35.89696 -32.39837 -31.67803 -30.38462 -29.15590 -28.41381 -25.58912 -23.15145 -22.08869 -21.16303 -19.88607 -16.73629 -16.11905 -15.14014 -14.95729 -14.71942 -13.69282 -13.37609 -13.12198 -12.89198 -12.50715 -11.96432 -11.70549 -11.38387 -10.97863 -10.82644 -10.79543 -10.64498 -10.39744 -10.28650 -9.90029 -9.81064 -9.60121 -8.86377 -8.47335 -8.24297 -8.09196 -6.76903 -5.59586 -3.03384 1.52758 1.72420 2.12152 3.40932 3.47320 3.48347 4.02816 4.55180 5.14248 5.21926 5.31244 5.49291 5.67280 5.73959 5.82234 6.04117 6.22474 6.34825 6.56160 6.64261 6.76356 6.85765 7.00493 7.12693 7.23815 7.25680 7.42834 7.70971 8.01234 8.32796 8.48642 9.34672 9.93413 10.36775 11.35158 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.008848 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.888646 B = 3163.970501 C = 4204.566038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.150 3.850 3 N -0.585 5.585 4 C -0.240 4.240 5 H 0.072 0.928 6 C -0.007 4.007 7 N -0.901 5.901 8 Si 0.902 3.098 9 H -0.290 1.290 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.173 3.827 13 C -0.050 4.050 14 C -0.102 4.102 15 C -0.110 4.110 16 C -0.135 4.135 17 C -0.098 4.098 18 C -0.083 4.083 19 Br -0.053 7.053 20 H 0.090 0.910 21 H 0.015 0.985 22 H 0.002 0.998 23 H 0.089 0.911 24 H 0.028 0.972 25 H 0.248 0.752 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 0.289 11.054 13.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 N -0.304 5.304 4 C -0.369 4.369 5 H 0.090 0.910 6 C -0.203 4.203 7 N -0.548 5.548 8 Si 0.733 3.267 9 H -0.218 1.218 10 H -0.219 1.219 11 H -0.208 1.208 12 C 0.044 3.956 13 C -0.055 4.055 14 C -0.121 4.121 15 C -0.128 4.128 16 C -0.154 4.154 17 C -0.118 4.118 18 C -0.163 4.163 19 Br 0.033 6.967 20 H 0.109 0.891 21 H 0.034 0.966 22 H 0.021 0.979 23 H 0.107 0.893 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.544 -0.346 11.080 12.872 hybrid contribution 0.659 0.611 -1.165 1.472 sum 7.202 0.265 9.914 12.257 Atomic orbital electron populations 1.22408 0.99531 0.97722 1.00427 1.21347 0.92397 0.83943 0.99787 1.44120 1.74829 1.11732 0.99762 1.19305 1.33213 1.00351 0.84001 0.91048 1.24754 0.99329 0.98584 0.97604 1.70229 1.35966 1.24081 1.24543 0.86270 0.78138 0.78183 0.84103 1.21776 1.21902 1.20832 1.19912 0.87603 0.97689 0.90350 1.21192 1.01001 0.91453 0.91893 1.21037 0.92978 0.98886 0.99240 1.21204 0.95489 0.97956 0.98164 1.20941 0.99161 0.94436 1.00900 1.20973 0.91673 0.99011 1.00115 1.21633 0.93822 0.95089 1.05729 1.96556 1.65246 1.45499 1.89395 0.89111 0.96628 0.97912 0.89348 0.95431 0.94070 0.92016 0.93074 0.85635 0.86247 0.86130 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.58 37.16 0.36 -3.08 16 2 C 0.15 3.69 5.62 -4.05 -0.02 3.67 16 3 N -0.58 -14.40 2.54 -174.61 -0.44 -14.84 16 4 C -0.24 -6.40 9.75 -15.06 -0.15 -6.55 16 5 H 0.07 1.86 7.87 -52.49 -0.41 1.44 16 6 C -0.01 -0.19 5.21 -17.43 -0.09 -0.28 16 7 N -0.90 -25.28 7.56 55.49 0.42 -24.86 16 8 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.17 3.59 5.36 -5.19 -0.03 3.56 16 13 C -0.05 -0.94 5.39 -104.59 -0.56 -1.51 16 14 C -0.10 -1.74 9.69 -39.59 -0.38 -2.12 16 15 C -0.11 -1.60 10.05 -39.58 -0.40 -2.00 16 16 C -0.14 -1.88 10.05 -39.59 -0.40 -2.28 16 17 C -0.10 -1.49 9.79 -39.56 -0.39 -1.88 16 18 C -0.08 -1.46 6.22 -39.52 -0.25 -1.71 16 19 Br -0.05 -0.90 28.60 -68.01 -1.95 -2.84 16 20 H 0.09 2.47 6.05 -51.93 -0.31 2.15 16 21 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 23 H 0.09 2.48 5.86 -51.93 -0.30 2.17 16 24 H 0.03 0.62 4.23 -51.93 -0.22 0.40 16 25 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.06 1.23 6.69 -51.93 -0.35 0.89 16 27 H 0.05 1.03 8.02 -51.93 -0.42 0.62 16 28 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -28.30 271.84 -8.90 -37.20 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.69 Total: -1.37 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.31 Total: -14.16 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: -0.02 Total: -39.70 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 35 Polarization: -0.90 SS G_CDS: -1.95 Total: -2.84 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.30 -8.90 -37.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061136.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.539 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds