Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47175 * 2 1 4 4 C 1.36935 * 120.00487 * 272.11936 * 3 2 1 5 5 H 1.07994 * 120.00778 * 186.00225 * 4 3 2 6 6 C 1.38811 * 119.99443 * 6.00585 * 4 3 2 7 7 N 1.31622 * 120.00228 * 14.04973 * 6 4 3 8 8 Si 1.86804 * 119.99981 * 194.04529 * 6 4 3 9 9 H 1.48500 * 109.47290 * 90.00084 * 8 6 4 10 10 H 1.48504 * 109.47171 * 210.00017 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00149 * 8 6 4 12 12 C 1.46502 * 120.00140 * 92.12356 * 3 2 1 13 13 C 1.50705 * 109.47355 * 97.86407 * 12 3 2 14 14 C 1.38238 * 120.00343 * 93.21796 * 13 12 3 15 15 C 1.38215 * 120.01082 * 179.70267 * 14 13 12 16 16 C 1.38266 * 120.02032 * 0.27325 * 15 14 13 17 17 C 1.38196 * 120.00734 * 0.02562 * 16 15 14 18 18 C 1.38305 * 120.00461 * 273.47076 * 13 12 3 19 19 Br 1.89097 * 120.01270 * 0.04558 * 18 13 12 20 20 H 1.09002 * 109.47246 * 59.99584 * 1 2 3 21 21 H 1.08997 * 109.47508 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47367 * 299.99828 * 1 2 3 23 23 H 1.08997 * 109.47499 * 239.99990 * 2 1 3 24 24 H 1.09002 * 109.47246 * 120.00416 * 2 1 3 25 25 H 0.97005 * 119.99823 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.47085 * 337.86713 * 12 3 2 27 27 H 1.09003 * 109.47294 * 217.86748 * 12 3 2 28 28 H 1.08005 * 119.99329 * 359.97438 * 14 13 12 29 29 H 1.07998 * 119.99195 * 180.25434 * 15 14 13 30 30 H 1.07994 * 119.99866 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.00742 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2052 2.0414 -1.1850 5 1 2.6558 3.0228 -1.1913 6 6 1.8154 1.4491 -2.3784 7 7 1.0267 0.3955 -2.3634 8 14 2.4102 2.1474 -4.0057 9 1 3.6883 1.4946 -4.3870 10 1 1.3915 1.8924 -5.0557 11 1 2.6236 3.6106 -3.8680 12 6 2.3068 2.0562 1.2679 13 6 3.7845 1.9787 1.5534 14 6 4.6201 3.0057 1.1559 15 6 5.9745 2.9377 1.4231 16 6 6.4951 1.8399 2.0830 17 6 5.6614 0.8098 2.4752 18 6 4.3056 0.8777 2.2084 19 35 3.1644 -0.5314 2.7448 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 0.7547 -0.0186 -3.1974 26 1 1.7554 1.5694 2.0723 27 1 2.0040 3.1011 1.2003 28 1 4.2139 3.8635 0.6404 29 1 6.6264 3.7422 1.1161 30 1 7.5535 1.7869 2.2912 31 1 6.0680 -0.0475 2.9910 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045061136.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = 48.598817 kcal Electronic energy + Delta-G solvation = -15117.474144 eV Core-core repulsion = 12638.810965 eV Total energy + Delta-G solvation = -2478.663179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24687 -37.70618 -33.99632 -33.02876 -32.18896 -30.71434 -29.93800 -27.29172 -25.01693 -23.39385 -22.69512 -21.57503 -18.57560 -17.47699 -17.01250 -16.32880 -16.00295 -15.54020 -15.19068 -14.44552 -14.27043 -14.01076 -13.72466 -13.38851 -13.17988 -12.76442 -12.54064 -12.37361 -12.24322 -11.98971 -11.93526 -11.69832 -11.59474 -11.36133 -10.56389 -10.14708 -9.71722 -9.48154 -8.70235 -7.63390 -5.08003 0.28808 0.48311 0.81504 1.48178 1.50466 1.57017 2.54981 2.81162 3.38425 3.88094 3.96579 4.04605 4.20612 4.43436 4.54698 4.74371 4.84371 4.90600 5.00031 5.11971 5.19499 5.31779 5.37406 5.46895 5.54744 5.64041 5.68068 5.97062 6.03985 6.30667 6.45513 7.30581 7.99198 8.38577 9.29457 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.008848 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.888646 B = 3163.970501 C = 4204.566038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.156 3.844 3 N -0.599 5.599 4 C -0.241 4.241 5 H 0.074 0.926 6 C -0.059 4.059 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.295 1.295 10 H -0.299 1.299 11 H -0.272 1.272 12 C 0.174 3.826 13 C -0.076 4.076 14 C -0.117 4.117 15 C -0.106 4.106 16 C -0.123 4.123 17 C -0.101 4.101 18 C -0.101 4.101 19 Br -0.056 7.056 20 H 0.061 0.939 21 H 0.025 0.975 22 H 0.011 0.989 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.240 0.760 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.124 0.876 29 H 0.152 0.848 30 H 0.161 0.839 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.279 0.940 11.933 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.031 3.969 3 N -0.320 5.320 4 C -0.371 4.371 5 H 0.092 0.908 6 C -0.252 4.252 7 N -0.571 5.571 8 Si 0.790 3.210 9 H -0.222 1.222 10 H -0.226 1.226 11 H -0.197 1.197 12 C 0.048 3.952 13 C -0.080 4.080 14 C -0.137 4.137 15 C -0.124 4.124 16 C -0.142 4.142 17 C -0.121 4.121 18 C -0.181 4.181 19 Br 0.030 6.970 20 H 0.079 0.921 21 H 0.044 0.956 22 H 0.030 0.970 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.142 0.858 29 H 0.170 0.830 30 H 0.178 0.822 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.751 0.332 11.997 14.853 hybrid contribution 0.061 0.451 -1.319 1.395 sum 8.811 0.783 10.678 13.866 Atomic orbital electron populations 1.22251 0.99502 0.98017 0.99268 1.21198 0.92390 0.84282 0.99067 1.44230 1.75544 1.11650 1.00559 1.19554 1.32141 1.00476 0.84944 0.90818 1.25400 1.00115 0.99518 1.00209 1.70425 1.37100 1.25231 1.24347 0.85361 0.76950 0.78024 0.80702 1.22231 1.22639 1.19722 1.19933 0.89424 0.97117 0.88763 1.20926 0.99559 0.93150 0.94409 1.21193 0.94304 0.98594 0.99618 1.21583 0.94638 0.99062 0.97083 1.21438 1.00921 0.93098 0.98753 1.21329 0.90721 1.00259 0.99774 1.21826 0.95027 0.94703 1.06494 1.96525 1.65732 1.45539 1.89237 0.92076 0.95628 0.96990 0.92832 0.93225 0.94954 0.91789 0.93196 0.85769 0.83000 0.82184 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 9.58 71.98 0.69 -5.74 16 2 C 0.16 7.76 5.62 86.38 0.49 8.25 16 3 N -0.60 -29.69 2.54 -706.35 -1.79 -31.48 16 4 C -0.24 -12.96 9.75 84.03 0.82 -12.15 16 5 H 0.07 3.83 7.87 -2.91 -0.02 3.80 16 6 C -0.06 -3.27 5.21 84.86 0.44 -2.83 16 7 N -0.92 -53.02 7.56 21.65 0.16 -52.86 16 8 Si 0.96 45.32 29.58 68.60 2.03 47.35 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 C 0.17 7.22 5.36 85.63 0.46 7.68 16 13 C -0.08 -2.78 5.39 -19.85 -0.11 -2.88 16 14 C -0.12 -3.81 9.69 22.26 0.22 -3.59 16 15 C -0.11 -2.69 10.05 22.27 0.22 -2.46 16 16 C -0.12 -2.89 10.05 22.27 0.22 -2.66 16 17 C -0.10 -2.77 9.79 22.29 0.22 -2.55 16 18 C -0.10 -3.40 6.22 22.31 0.14 -3.26 16 19 Br -0.06 -1.86 28.60 -20.37 -0.58 -2.44 16 20 H 0.06 3.39 6.05 -2.39 -0.01 3.38 16 21 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 23 H 0.05 3.07 5.86 -2.39 -0.01 3.06 16 24 H 0.05 2.23 4.23 -2.39 -0.01 2.22 16 25 H 0.24 13.66 8.31 -92.70 -0.77 12.89 16 26 H 0.06 2.55 6.69 -2.39 -0.02 2.54 16 27 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 28 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -60.86 271.84 4.75 -56.11 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.12 Total: 5.51 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 3.81 Total: -22.20 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -1.63 Total: -84.34 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 35 Polarization: -1.86 SS G_CDS: -0.58 Total: -2.44 kcal Total: -60.86 4.75 -56.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061136.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.708 kcal (2) G-P(sol) polarization free energy of solvation -60.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds