Wall clock time and date at job start Tue Mar 31 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46986 * 2 1 4 4 C 1.36940 * 119.99838 * 89.45799 * 3 2 1 5 5 H 1.07995 * 120.00400 * 33.84362 * 4 3 2 6 6 C 1.38817 * 119.99786 * 213.85213 * 4 3 2 7 7 N 1.31615 * 120.00131 * 22.84427 * 6 4 3 8 8 Si 1.86797 * 119.99661 * 202.85192 * 6 4 3 9 9 H 1.48501 * 109.47375 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47344 * 119.99675 * 8 6 4 11 11 H 1.48507 * 109.46734 * 239.99655 * 8 6 4 12 12 C 1.46500 * 119.99908 * 269.18033 * 3 2 1 13 13 C 1.50698 * 109.46877 * 270.27402 * 12 3 2 14 14 C 1.38237 * 119.99136 * 269.72428 * 13 12 3 15 15 C 1.38221 * 120.00875 * 179.77367 * 14 13 12 16 16 C 1.38325 * 119.99040 * 0.50452 * 15 14 13 17 17 Br 1.89101 * 120.01159 * 179.72744 * 16 15 14 18 18 C 1.38326 * 119.98002 * 359.75130 * 16 15 14 19 19 C 1.38219 * 119.98649 * 359.97438 * 18 16 15 20 20 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46702 * 299.99562 * 1 2 3 22 22 H 1.08996 * 109.47206 * 59.99564 * 1 2 3 23 23 H 1.08991 * 109.46612 * 240.00211 * 2 1 3 24 24 H 1.09001 * 109.47364 * 119.99993 * 2 1 3 25 25 H 0.96999 * 119.99755 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47233 * 30.27998 * 12 3 2 27 27 H 1.09000 * 109.46847 * 150.27855 * 12 3 2 28 28 H 1.07996 * 119.99403 * 0.02562 * 14 13 12 29 29 H 1.08005 * 120.00348 * 180.23529 * 15 14 13 30 30 H 1.07997 * 120.00736 * 179.97438 * 18 16 15 31 31 H 1.08004 * 119.99273 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2360 2.0305 1.1859 5 1 2.5852 1.4799 2.0469 6 6 2.0076 3.3964 1.2814 7 7 1.1880 3.9872 0.4379 8 14 2.8635 4.3959 2.6072 9 1 3.7263 3.5025 3.4212 10 1 3.6984 5.4475 1.9728 11 1 1.8459 5.0323 3.4818 12 6 2.2796 2.0658 -1.2686 13 6 3.7067 1.8214 -1.6866 14 6 4.7031 2.6910 -1.2844 15 6 6.0128 2.4646 -1.6637 16 6 6.3249 1.3735 -2.4545 17 35 8.1154 1.0675 -2.9802 18 6 5.3267 0.5065 -2.8612 19 6 4.0181 0.7306 -2.4767 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8932 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.0287 4.9417 0.5045 26 1 1.6057 1.6816 -2.0343 27 1 2.1157 3.1362 -1.1443 28 1 4.4588 3.5452 -0.6703 29 1 6.7918 3.1420 -1.3462 30 1 5.5698 -0.3453 -3.4790 31 1 3.2386 0.0539 -2.7945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061336.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:54 Heat of formation + Delta-G solvation = 39.009231 kcal Electronic energy + Delta-G solvation = -14809.976233 eV Core-core repulsion = 12330.897218 eV Total energy + Delta-G solvation = -2479.079015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.82573 -35.90587 -32.21080 -31.90996 -30.52729 -29.86992 -28.27552 -25.39628 -23.52791 -22.24353 -21.05757 -19.93158 -16.95436 -15.90435 -15.08010 -14.69026 -14.47687 -14.10296 -13.72254 -13.03230 -12.94983 -12.67650 -12.36735 -11.88079 -11.27018 -11.22888 -10.97832 -10.85313 -10.61774 -10.47756 -10.32831 -10.04348 -10.01344 -9.98156 -9.82344 -8.61350 -8.51726 -8.03842 -6.73270 -5.89268 -3.40510 1.63665 1.82656 1.94143 3.29180 3.39612 3.42826 4.15302 4.43328 5.21614 5.24237 5.30817 5.53556 5.74260 5.84721 5.95343 6.06186 6.23825 6.32295 6.40075 6.45869 6.57396 6.65487 6.67153 6.88993 6.92522 7.18446 7.28195 7.38964 7.60637 7.74531 8.40368 9.07375 9.71148 10.27238 11.11423 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.005517 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.858192 B = 5073.979031 C = 5942.061379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 N -0.575 5.575 4 C -0.251 4.251 5 H 0.063 0.937 6 C 0.009 3.991 7 N -0.884 5.884 8 Si 0.890 3.110 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.289 1.289 12 C 0.166 3.834 13 C -0.052 4.052 14 C -0.095 4.095 15 C -0.096 4.096 16 C -0.109 4.109 17 Br -0.080 7.080 18 C -0.097 4.097 19 C -0.119 4.119 20 H 0.031 0.969 21 H 0.055 0.945 22 H 0.043 0.957 23 H 0.034 0.966 24 H 0.042 0.958 25 H 0.256 0.744 26 H 0.036 0.964 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.438 -5.246 -7.616 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 N -0.294 5.294 4 C -0.380 4.380 5 H 0.080 0.920 6 C -0.191 4.191 7 N -0.526 5.526 8 Si 0.719 3.281 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.216 1.216 12 C 0.040 3.960 13 C -0.056 4.056 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.188 4.188 17 Br 0.005 6.995 18 C -0.117 4.117 19 C -0.139 4.139 20 H 0.050 0.950 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.129 0.871 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.004 -5.205 -7.782 13.701 hybrid contribution 0.094 0.622 0.832 1.043 sum 10.097 -4.583 -6.950 13.087 Atomic orbital electron populations 1.22259 0.99437 0.98464 1.01990 1.20885 0.92073 0.87106 0.98330 1.43800 1.73501 1.10252 1.01882 1.19126 1.37805 0.91236 0.89862 0.91960 1.25049 0.97468 0.98472 0.98096 1.69973 1.33410 1.10348 1.38892 0.86416 0.79597 0.80321 0.81728 1.19999 1.21228 1.21574 1.20157 0.86286 1.02928 0.86629 1.21469 1.00355 0.92305 0.91427 1.21146 0.91307 1.00154 0.98840 1.21055 0.97294 0.96054 0.97154 1.21490 0.89581 1.01167 1.06562 1.96573 1.15266 1.96503 1.91172 1.20934 0.92436 0.98313 1.00045 1.21073 0.95199 0.98200 0.99441 0.94986 0.92614 0.93742 0.94762 0.93985 0.93433 0.94556 0.87147 0.85344 0.86061 0.86179 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 10.24 37.16 0.38 -2.73 16 2 C 0.14 2.89 6.39 -4.04 -0.03 2.86 16 3 N -0.58 -13.54 2.43 -174.61 -0.43 -13.96 16 4 C -0.25 -6.51 9.49 -15.06 -0.14 -6.66 16 5 H 0.06 1.65 7.93 -52.49 -0.42 1.24 16 6 C 0.01 0.24 4.95 -17.43 -0.09 0.15 16 7 N -0.88 -23.98 11.32 55.49 0.63 -23.35 16 8 Si 0.89 20.69 29.61 -169.99 -5.03 15.66 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 C 0.17 3.67 5.41 -5.19 -0.03 3.64 16 13 C -0.05 -1.02 5.46 -104.62 -0.57 -1.59 16 14 C -0.09 -1.83 9.70 -39.59 -0.38 -2.22 16 15 C -0.10 -1.64 9.79 -39.56 -0.39 -2.02 16 16 C -0.11 -1.76 6.22 -39.52 -0.25 -2.00 16 17 Br -0.08 -1.10 33.70 -68.01 -2.29 -3.39 16 18 C -0.10 -1.54 9.79 -39.56 -0.39 -1.92 16 19 C -0.12 -2.04 9.70 -39.59 -0.38 -2.43 16 20 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 1.18 8.14 -51.92 -0.42 0.76 16 22 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.03 0.63 8.06 -51.93 -0.42 0.21 16 24 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 25 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 26 H 0.04 0.76 8.02 -51.93 -0.42 0.34 16 27 H 0.11 2.76 5.26 -51.93 -0.27 2.49 16 28 H 0.13 2.64 8.06 -52.49 -0.42 2.21 16 29 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 287.81 15.07 4.34 4.34 Total: -1.00 -26.47 287.81 -9.08 -35.56 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.04 Total: 0.06 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.26 Total: -14.91 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.20 Total: -37.31 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -2.29 Total: -3.39 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.47 -9.08 -35.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061336.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.565 kcal (2) G-P(sol) polarization free energy of solvation -26.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds