Wall clock time and date at job start Tue Mar 31 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46986 * 2 1 4 4 C 1.36940 * 119.99838 * 89.45799 * 3 2 1 5 5 H 1.07995 * 120.00400 * 33.84362 * 4 3 2 6 6 C 1.38817 * 119.99786 * 213.85213 * 4 3 2 7 7 N 1.31615 * 120.00131 * 22.84427 * 6 4 3 8 8 Si 1.86797 * 119.99661 * 202.85192 * 6 4 3 9 9 H 1.48501 * 109.47375 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47344 * 119.99675 * 8 6 4 11 11 H 1.48507 * 109.46734 * 239.99655 * 8 6 4 12 12 C 1.46500 * 119.99908 * 269.18033 * 3 2 1 13 13 C 1.50698 * 109.46877 * 270.27402 * 12 3 2 14 14 C 1.38237 * 119.99136 * 269.72428 * 13 12 3 15 15 C 1.38221 * 120.00875 * 179.77367 * 14 13 12 16 16 C 1.38325 * 119.99040 * 0.50452 * 15 14 13 17 17 Br 1.89101 * 120.01159 * 179.72744 * 16 15 14 18 18 C 1.38326 * 119.98002 * 359.75130 * 16 15 14 19 19 C 1.38219 * 119.98649 * 359.97438 * 18 16 15 20 20 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46702 * 299.99562 * 1 2 3 22 22 H 1.08996 * 109.47206 * 59.99564 * 1 2 3 23 23 H 1.08991 * 109.46612 * 240.00211 * 2 1 3 24 24 H 1.09001 * 109.47364 * 119.99993 * 2 1 3 25 25 H 0.96999 * 119.99755 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47233 * 30.27998 * 12 3 2 27 27 H 1.09000 * 109.46847 * 150.27855 * 12 3 2 28 28 H 1.07996 * 119.99403 * 0.02562 * 14 13 12 29 29 H 1.08005 * 120.00348 * 180.23529 * 15 14 13 30 30 H 1.07997 * 120.00736 * 179.97438 * 18 16 15 31 31 H 1.08004 * 119.99273 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2360 2.0305 1.1859 5 1 2.5852 1.4799 2.0469 6 6 2.0076 3.3964 1.2814 7 7 1.1880 3.9872 0.4379 8 14 2.8635 4.3959 2.6072 9 1 3.7263 3.5025 3.4212 10 1 3.6984 5.4475 1.9728 11 1 1.8459 5.0323 3.4818 12 6 2.2796 2.0658 -1.2686 13 6 3.7067 1.8214 -1.6866 14 6 4.7031 2.6910 -1.2844 15 6 6.0128 2.4646 -1.6637 16 6 6.3249 1.3735 -2.4545 17 35 8.1154 1.0675 -2.9802 18 6 5.3267 0.5065 -2.8612 19 6 4.0181 0.7306 -2.4767 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8932 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.0287 4.9417 0.5045 26 1 1.6057 1.6816 -2.0343 27 1 2.1157 3.1362 -1.1443 28 1 4.4588 3.5452 -0.6703 29 1 6.7918 3.1420 -1.3462 30 1 5.5698 -0.3453 -3.4790 31 1 3.2386 0.0539 -2.7945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045061336.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:53 Heat of formation + Delta-G solvation = 27.351888 kcal Electronic energy + Delta-G solvation = -14810.481733 eV Core-core repulsion = 12330.897218 eV Total energy + Delta-G solvation = -2479.584515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23562 -37.61621 -33.82301 -33.57654 -31.88786 -31.30816 -29.90000 -27.12487 -25.24430 -23.62159 -22.57345 -21.57073 -18.78211 -17.32846 -16.82837 -16.20870 -15.98868 -15.78095 -15.45641 -14.54969 -14.36570 -14.11210 -13.94729 -13.42426 -13.14316 -12.90799 -12.64119 -12.38748 -12.27297 -12.13371 -11.81806 -11.71442 -11.63394 -11.45171 -11.21073 -10.55557 -9.87380 -9.41211 -8.62538 -7.84698 -5.39635 0.26312 0.46744 0.68399 1.41873 1.47547 1.55753 2.49517 2.76898 3.24407 3.84431 3.91715 4.04934 4.25557 4.44930 4.47418 4.55792 4.76875 4.84011 4.89155 4.91227 5.06912 5.15384 5.29878 5.31016 5.44382 5.55072 5.61422 5.76654 5.91967 6.01322 6.46600 7.15072 7.85318 8.35830 9.12604 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.005517 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.858192 B = 5073.979031 C = 5942.061379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 N -0.590 5.590 4 C -0.256 4.256 5 H 0.052 0.948 6 C -0.029 4.029 7 N -0.911 5.911 8 Si 0.941 3.059 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.292 1.292 12 C 0.172 3.828 13 C -0.069 4.069 14 C -0.113 4.113 15 C -0.097 4.097 16 C -0.111 4.111 17 Br -0.050 7.050 18 C -0.089 4.089 19 C -0.116 4.116 20 H 0.067 0.933 21 H 0.026 0.974 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.252 0.748 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.918 -6.837 -8.617 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.012 3.988 3 N -0.310 5.310 4 C -0.387 4.387 5 H 0.069 0.931 6 C -0.227 4.227 7 N -0.555 5.555 8 Si 0.770 3.230 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.219 1.219 12 C 0.046 3.954 13 C -0.072 4.072 14 C -0.133 4.133 15 C -0.116 4.116 16 C -0.190 4.190 17 Br 0.035 6.965 18 C -0.109 4.109 19 C -0.136 4.136 20 H 0.086 0.914 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.154 0.846 30 H 0.169 0.831 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.502 -6.814 -8.795 16.003 hybrid contribution -0.271 1.038 1.056 1.505 sum 11.231 -5.777 -7.739 14.812 Atomic orbital electron populations 1.22125 0.98653 1.00176 1.00071 1.21034 0.92663 0.85722 0.99399 1.43986 1.74276 1.11203 1.01541 1.19210 1.37226 0.91599 0.90630 0.93052 1.25549 0.98110 0.99192 0.99835 1.70078 1.34820 1.10146 1.40464 0.85624 0.78563 0.79072 0.79774 1.19711 1.21171 1.21923 1.19934 0.88244 1.00908 0.86302 1.21212 0.98727 0.93923 0.93388 1.21030 0.92651 0.99964 0.99678 1.21164 0.96570 0.96801 0.97113 1.21738 0.91371 1.00445 1.05466 1.96608 1.12845 1.96305 1.90782 1.21259 0.91577 0.98737 0.99326 1.21223 0.96542 0.97323 0.98464 0.91392 0.95511 0.94567 0.92297 0.94151 0.93845 0.93952 0.90380 0.87751 0.84599 0.83132 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 10.24 71.98 0.74 -4.92 16 2 C 0.14 5.43 6.39 86.38 0.55 5.98 16 3 N -0.59 -27.96 2.43 -706.35 -1.72 -29.68 16 4 C -0.26 -13.58 9.49 84.03 0.80 -12.78 16 5 H 0.05 2.78 7.93 -2.91 -0.02 2.76 16 6 C -0.03 -1.57 4.95 84.86 0.42 -1.15 16 7 N -0.91 -51.05 11.32 21.65 0.25 -50.80 16 8 Si 0.94 43.53 29.61 68.60 2.03 45.56 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 C 0.17 7.70 5.41 85.63 0.46 8.17 16 13 C -0.07 -2.69 5.46 -19.86 -0.11 -2.80 16 14 C -0.11 -4.41 9.70 22.27 0.22 -4.20 16 15 C -0.10 -3.18 9.79 22.29 0.22 -2.96 16 16 C -0.11 -3.27 6.22 22.31 0.14 -3.14 16 17 Br -0.05 -1.23 33.70 -20.37 -0.69 -1.91 16 18 C -0.09 -2.52 9.79 22.29 0.22 -2.30 16 19 C -0.12 -3.69 9.70 22.27 0.22 -3.48 16 20 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 21 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 22 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 23 H 0.06 2.03 8.06 -2.39 -0.02 2.01 16 24 H 0.04 1.60 8.04 -2.39 -0.02 1.58 16 25 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 26 H 0.04 1.78 8.02 -2.39 -0.02 1.76 16 27 H 0.08 4.06 5.26 -2.39 -0.01 4.05 16 28 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -56.95 287.81 4.84 -52.11 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.10 Total: 8.30 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 3.87 Total: -23.57 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.47 Total: -80.48 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 35 Polarization: -1.23 SS G_CDS: -0.69 Total: -1.91 kcal Total: -56.95 4.84 -52.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061336.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.459 kcal (2) G-P(sol) polarization free energy of solvation -56.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds