Wall clock time and date at job start Tue Mar 31 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47186 * 2 1 4 4 C 1.36939 * 119.99930 * 275.65347 * 3 2 1 5 5 H 1.07999 * 119.99739 * 33.99966 * 4 3 2 6 6 C 1.38806 * 119.99906 * 213.99673 * 4 3 2 7 7 N 1.31625 * 120.00375 * 22.94303 * 6 4 3 8 8 Si 1.86803 * 120.00108 * 202.94370 * 6 4 3 9 9 H 1.48503 * 109.47114 * 89.99973 * 8 6 4 10 10 H 1.48503 * 109.47272 * 210.00301 * 8 6 4 11 11 H 1.48504 * 109.46981 * 330.00163 * 8 6 4 12 12 C 1.46499 * 120.00000 * 95.65201 * 3 2 1 13 13 C 1.50705 * 109.47228 * 269.99850 * 12 3 2 14 14 C 1.38263 * 119.99523 * 270.27621 * 13 12 3 15 15 C 1.38221 * 120.01686 * 180.23129 * 14 13 12 16 16 C 1.38238 * 120.00965 * 359.49395 * 15 14 13 17 17 C 1.38300 * 119.99110 * 0.25103 * 16 15 14 18 18 Br 1.89097 * 120.00973 * 179.97438 * 17 16 15 19 19 C 1.38199 * 119.99319 * 90.00263 * 13 12 3 20 20 H 1.09010 * 109.46950 * 60.00161 * 1 2 3 21 21 H 1.08999 * 109.47734 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47385 * 300.00538 * 1 2 3 23 23 H 1.08996 * 109.47254 * 239.99864 * 2 1 3 24 24 H 1.08997 * 109.46707 * 119.99690 * 2 1 3 25 25 H 0.96993 * 120.00245 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.46930 * 150.00463 * 12 3 2 27 27 H 1.08992 * 109.47503 * 30.00286 * 12 3 2 28 28 H 1.07997 * 119.98984 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.98894 * 179.77170 * 15 14 13 30 30 H 1.08003 * 119.99957 * 180.23047 * 16 15 14 31 31 H 1.08002 * 120.00342 * 0.04031 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1364 2.0656 -1.1802 5 1 1.4324 1.8886 -1.9798 6 6 3.1609 2.9870 -1.3486 7 7 4.2518 2.8992 -0.6174 8 14 2.9914 4.3514 -2.6131 9 1 2.3634 5.5385 -1.9793 10 1 4.3349 4.7181 -3.1288 11 1 2.1412 3.8823 -3.7367 12 6 2.3803 2.0301 1.2626 13 6 1.1714 2.7240 1.8354 14 6 0.9038 4.0379 1.4979 15 6 -0.2022 4.6762 2.0268 16 6 -1.0471 3.9980 2.8853 17 6 -0.7828 2.6821 3.2190 18 35 -1.9379 1.7541 4.3939 19 6 0.3272 2.0452 2.6936 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 4.9678 3.5428 -0.7353 26 1 3.1677 2.7620 1.0822 27 1 2.7366 1.2795 1.9679 28 1 1.5615 4.5667 0.8240 29 1 -0.4087 5.7036 1.7657 30 1 -1.9133 4.4958 3.2955 31 1 0.5342 1.0178 2.9543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061528.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:57 Heat of formation + Delta-G solvation = 39.813361 kcal Electronic energy + Delta-G solvation = -15014.279035 eV Core-core repulsion = 12535.234890 eV Total energy + Delta-G solvation = -2479.044145 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.84787 -35.87823 -32.09026 -31.94348 -31.10529 -29.09684 -28.43193 -25.69333 -23.59014 -21.90467 -21.04345 -20.04289 -16.83729 -16.18562 -15.15542 -14.68806 -14.43846 -13.88302 -13.67055 -13.01684 -12.95213 -12.63619 -12.40561 -11.95615 -11.40647 -11.22279 -10.94434 -10.75435 -10.63986 -10.50221 -10.42627 -10.13848 -9.99557 -9.94587 -9.83743 -8.58315 -8.34131 -8.10226 -6.71227 -5.88206 -3.41138 1.64752 1.82990 1.94324 3.30014 3.39124 3.40673 4.16056 4.43079 5.19573 5.26963 5.34333 5.56106 5.73323 5.85066 5.96294 6.02884 6.14344 6.33789 6.37797 6.48402 6.62045 6.62209 6.67101 6.88084 6.90367 7.12776 7.27434 7.40297 7.59703 7.75372 8.41286 9.08774 9.72323 10.28633 11.11792 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.028324 B = 0.005865 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.334408 B = 4773.224893 C = 5309.076057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.142 3.858 3 N -0.575 5.575 4 C -0.251 4.251 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.168 3.832 13 C -0.062 4.062 14 C -0.084 4.084 15 C -0.121 4.121 16 C -0.116 4.116 17 C -0.092 4.092 18 Br -0.079 7.079 19 C -0.091 4.091 20 H 0.048 0.952 21 H 0.036 0.964 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.256 0.744 26 H 0.112 0.888 27 H 0.036 0.964 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 -0.277 9.298 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 N -0.294 5.294 4 C -0.381 4.381 5 H 0.080 0.920 6 C -0.191 4.191 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.042 3.958 13 C -0.066 4.066 14 C -0.104 4.104 15 C -0.140 4.140 16 C -0.136 4.136 17 C -0.171 4.171 18 Br 0.006 6.994 19 C -0.112 4.112 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.054 0.946 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.924 -0.582 9.687 13.880 hybrid contribution -0.045 1.023 -0.930 1.383 sum -9.969 0.441 8.758 13.277 Atomic orbital electron populations 1.22386 0.99863 0.99079 1.01623 1.20870 0.91841 0.86799 0.98914 1.43771 1.75517 1.08151 1.02003 1.19063 1.07447 1.18599 0.92956 0.92007 1.25059 0.94154 1.01464 0.98395 1.69969 1.04577 1.35828 1.42374 0.86439 0.77101 0.82751 0.81507 1.21168 1.21651 1.20212 1.20180 0.92539 0.97189 0.85920 1.21368 0.99118 0.93650 0.92505 1.21282 0.96615 0.94880 0.97580 1.21107 0.95359 0.99725 0.97804 1.20828 1.00136 0.92884 0.99752 1.21641 0.97646 0.95912 1.01879 1.96583 1.63851 1.76796 1.62132 1.20987 0.93210 0.99517 0.97466 0.93326 0.94527 0.93253 0.93609 0.94629 0.93352 0.87081 0.94591 0.85602 0.86155 0.86234 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.20 37.16 0.38 -2.79 16 2 C 0.14 2.94 6.44 -4.04 -0.03 2.91 16 3 N -0.58 -13.69 2.44 -174.62 -0.43 -14.12 16 4 C -0.25 -6.56 9.48 -15.06 -0.14 -6.70 16 5 H 0.06 1.65 7.93 -52.49 -0.42 1.23 16 6 C 0.01 0.24 4.95 -17.43 -0.09 0.16 16 7 N -0.88 -24.12 11.31 55.49 0.63 -23.49 16 8 Si 0.89 20.70 29.61 -169.99 -5.03 15.67 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 C 0.17 3.76 5.46 -5.19 -0.03 3.73 16 13 C -0.06 -1.24 5.44 -104.62 -0.57 -1.80 16 14 C -0.08 -1.63 9.70 -39.58 -0.38 -2.01 16 15 C -0.12 -1.99 10.05 -39.59 -0.40 -2.38 16 16 C -0.12 -1.81 9.79 -39.56 -0.39 -2.20 16 17 C -0.09 -1.51 6.22 -39.52 -0.25 -1.75 16 18 Br -0.08 -1.10 33.70 -68.01 -2.29 -3.40 16 19 C -0.09 -1.63 7.61 -39.56 -0.30 -1.93 16 20 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.93 6.13 -51.93 -0.32 0.61 16 23 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 24 H 0.04 0.68 7.83 -51.93 -0.41 0.28 16 25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.11 2.79 5.26 -51.93 -0.27 2.52 16 27 H 0.04 0.76 7.80 -51.93 -0.41 0.36 16 28 H 0.13 2.59 8.06 -52.49 -0.42 2.16 16 29 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 31 H 0.12 2.08 8.02 -52.49 -0.42 1.66 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -26.53 283.56 -8.95 -35.48 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.91 Total: 0.36 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.19 Total: -14.77 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.20 Total: -37.61 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -2.29 Total: -3.40 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.53 -8.95 -35.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061528.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.298 kcal (2) G-P(sol) polarization free energy of solvation -26.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds