Wall clock time and date at job start Tue Mar 31 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47186 * 2 1 4 4 C 1.36939 * 119.99930 * 275.65347 * 3 2 1 5 5 H 1.07999 * 119.99739 * 33.99966 * 4 3 2 6 6 C 1.38806 * 119.99906 * 213.99673 * 4 3 2 7 7 N 1.31625 * 120.00375 * 22.94303 * 6 4 3 8 8 Si 1.86803 * 120.00108 * 202.94370 * 6 4 3 9 9 H 1.48503 * 109.47114 * 89.99973 * 8 6 4 10 10 H 1.48503 * 109.47272 * 210.00301 * 8 6 4 11 11 H 1.48504 * 109.46981 * 330.00163 * 8 6 4 12 12 C 1.46499 * 120.00000 * 95.65201 * 3 2 1 13 13 C 1.50705 * 109.47228 * 269.99850 * 12 3 2 14 14 C 1.38263 * 119.99523 * 270.27621 * 13 12 3 15 15 C 1.38221 * 120.01686 * 180.23129 * 14 13 12 16 16 C 1.38238 * 120.00965 * 359.49395 * 15 14 13 17 17 C 1.38300 * 119.99110 * 0.25103 * 16 15 14 18 18 Br 1.89097 * 120.00973 * 179.97438 * 17 16 15 19 19 C 1.38199 * 119.99319 * 90.00263 * 13 12 3 20 20 H 1.09010 * 109.46950 * 60.00161 * 1 2 3 21 21 H 1.08999 * 109.47734 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47385 * 300.00538 * 1 2 3 23 23 H 1.08996 * 109.47254 * 239.99864 * 2 1 3 24 24 H 1.08997 * 109.46707 * 119.99690 * 2 1 3 25 25 H 0.96993 * 120.00245 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.46930 * 150.00463 * 12 3 2 27 27 H 1.08992 * 109.47503 * 30.00286 * 12 3 2 28 28 H 1.07997 * 119.98984 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.98894 * 179.77170 * 15 14 13 30 30 H 1.08003 * 119.99957 * 180.23047 * 16 15 14 31 31 H 1.08002 * 120.00342 * 0.04031 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1364 2.0656 -1.1802 5 1 1.4324 1.8886 -1.9798 6 6 3.1609 2.9870 -1.3486 7 7 4.2518 2.8992 -0.6174 8 14 2.9914 4.3514 -2.6131 9 1 2.3634 5.5385 -1.9793 10 1 4.3349 4.7181 -3.1288 11 1 2.1412 3.8823 -3.7367 12 6 2.3803 2.0301 1.2626 13 6 1.1714 2.7240 1.8354 14 6 0.9038 4.0379 1.4979 15 6 -0.2022 4.6762 2.0268 16 6 -1.0471 3.9980 2.8853 17 6 -0.7828 2.6821 3.2190 18 35 -1.9379 1.7541 4.3939 19 6 0.3272 2.0452 2.6936 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 4.9678 3.5428 -0.7353 26 1 3.1677 2.7620 1.0822 27 1 2.7366 1.2795 1.9679 28 1 1.5615 4.5667 0.8240 29 1 -0.4087 5.7036 1.7657 30 1 -1.9133 4.4958 3.2955 31 1 0.5342 1.0178 2.9543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045061528.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:57 Heat of formation + Delta-G solvation = 27.945502 kcal Electronic energy + Delta-G solvation = -15014.793664 eV Core-core repulsion = 12535.234890 eV Total energy + Delta-G solvation = -2479.558774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26673 -37.60114 -33.86782 -33.42946 -32.51868 -30.63612 -29.89060 -27.46961 -25.30599 -23.26944 -22.60786 -21.70592 -18.68365 -17.60186 -16.92441 -16.19935 -15.94161 -15.60918 -15.39821 -14.49460 -14.35784 -14.12218 -13.97387 -13.47133 -13.12018 -13.01860 -12.67682 -12.37801 -12.27371 -12.08208 -11.85655 -11.74830 -11.69745 -11.48508 -11.19965 -10.53488 -9.69536 -9.49412 -8.62407 -7.84134 -5.41745 0.27229 0.46760 0.67763 1.44390 1.48033 1.55237 2.49662 2.77408 3.23076 3.83813 3.96118 4.04726 4.26809 4.41893 4.47004 4.56865 4.67627 4.78886 4.84577 4.99651 5.06834 5.12732 5.27323 5.29301 5.46979 5.55221 5.61972 5.73524 5.90633 6.00254 6.45854 7.14650 7.84347 8.35926 9.12254 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.028324 B = 0.005865 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.334408 B = 4773.224893 C = 5309.076057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.591 5.591 4 C -0.258 4.258 5 H 0.051 0.949 6 C -0.030 4.030 7 N -0.913 5.913 8 Si 0.946 3.054 9 H -0.280 1.280 10 H -0.293 1.293 11 H -0.274 1.274 12 C 0.173 3.827 13 C -0.078 4.078 14 C -0.105 4.105 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.097 4.097 18 Br -0.050 7.050 19 C -0.092 4.092 20 H 0.031 0.969 21 H 0.065 0.935 22 H 0.047 0.953 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.253 0.747 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.841 -0.003 10.278 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 N -0.311 5.311 4 C -0.388 4.388 5 H 0.069 0.931 6 C -0.227 4.227 7 N -0.557 5.557 8 Si 0.774 3.226 9 H -0.206 1.206 10 H -0.220 1.220 11 H -0.199 1.199 12 C 0.047 3.953 13 C -0.082 4.082 14 C -0.124 4.124 15 C -0.134 4.134 16 C -0.126 4.126 17 C -0.176 4.176 18 Br 0.035 6.965 19 C -0.113 4.113 20 H 0.050 0.950 21 H 0.084 0.916 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.121 0.879 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.098 -0.318 10.684 16.143 hybrid contribution 0.549 0.882 -1.127 1.533 sum -11.549 0.564 9.557 15.001 Atomic orbital electron populations 1.22203 0.97887 1.00679 1.00654 1.20985 0.93316 0.85474 0.99030 1.43954 1.75947 1.09351 1.01838 1.19143 1.06940 1.19045 0.93678 0.93099 1.25603 0.93905 1.03065 1.00152 1.70079 1.05170 1.36474 1.43995 0.85611 0.76677 0.80622 0.79692 1.20644 1.22000 1.19927 1.19957 0.93118 0.96562 0.85618 1.21024 0.98764 0.94187 0.94190 1.21223 0.97834 0.94971 0.98370 1.21360 0.94034 1.00932 0.97025 1.21210 1.00404 0.92507 0.98449 1.21835 0.97471 0.96471 1.01797 1.96613 1.62551 1.76360 1.60961 1.20948 0.93477 0.99667 0.97186 0.94992 0.91572 0.93375 0.94691 0.93260 0.93721 0.90095 0.94398 0.87908 0.83344 0.83112 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.20 71.98 0.73 -4.83 16 2 C 0.14 5.66 6.44 86.38 0.56 6.21 16 3 N -0.59 -28.59 2.44 -706.37 -1.73 -30.32 16 4 C -0.26 -13.76 9.48 84.03 0.80 -12.96 16 5 H 0.05 2.78 7.93 -2.91 -0.02 2.75 16 6 C -0.03 -1.60 4.95 84.86 0.42 -1.18 16 7 N -0.91 -51.31 11.31 21.65 0.24 -51.07 16 8 Si 0.95 43.27 29.61 68.60 2.03 45.30 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.17 7.96 5.46 85.63 0.47 8.42 16 13 C -0.08 -3.09 5.44 -19.87 -0.11 -3.20 16 14 C -0.10 -4.02 9.70 22.27 0.22 -3.80 16 15 C -0.11 -3.51 10.05 22.27 0.22 -3.28 16 16 C -0.11 -2.95 9.79 22.28 0.22 -2.74 16 17 C -0.10 -2.91 6.22 22.31 0.14 -2.77 16 18 Br -0.05 -1.25 33.70 -20.37 -0.69 -1.93 16 19 C -0.09 -3.17 7.61 22.29 0.17 -3.00 16 20 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 21 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.05 1.73 6.13 -2.39 -0.01 1.71 16 23 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 24 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 25 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 26 H 0.08 4.25 5.26 -2.39 -0.01 4.24 16 27 H 0.04 1.65 7.80 -2.39 -0.02 1.63 16 28 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.13 4.12 8.02 -2.91 -0.02 4.10 16 Total: -1.00 -56.96 283.56 4.81 -52.15 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.11 Total: 8.99 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 3.83 Total: -23.12 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -1.48 Total: -81.39 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 35 Polarization: -1.25 SS G_CDS: -0.69 Total: -1.93 kcal Total: -56.96 4.81 -52.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061528.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.095 kcal (2) G-P(sol) polarization free energy of solvation -56.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds