Wall clock time and date at job start Tue Mar 31 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00293 * 2 1 4 4 H 1.48505 * 109.46975 * 269.99723 * 3 2 1 5 5 H 1.48494 * 109.47227 * 29.99765 * 3 2 1 6 6 H 1.48503 * 109.47154 * 150.00063 * 3 2 1 7 7 C 1.37880 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47177 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47104 * 180.02562 * 10 9 7 12 12 C 1.34227 * 116.99894 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99886 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00088 * 179.97438 * 12 11 10 15 15 N 1.46504 * 109.47380 * 179.97438 * 14 12 11 16 16 C 1.34774 * 119.99745 * 179.97438 * 15 14 12 17 17 O 1.21702 * 120.00519 * 359.97438 * 16 15 14 18 18 C 1.46584 * 119.99515 * 180.02562 * 16 15 14 19 19 C 1.36652 * 125.45799 * 180.02562 * 18 16 15 20 20 C 1.37475 * 113.29531 * 179.97438 * 19 18 16 21 21 C 1.33814 * 115.10326 * 0.02562 * 20 19 18 22 22 S 1.70613 * 110.95401 * 359.97438 * 21 20 19 23 23 H 0.96996 * 119.99576 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46961 * 59.99949 * 9 7 2 25 25 H 1.09000 * 109.46814 * 299.99665 * 9 7 2 26 26 H 1.08995 * 109.46973 * 59.99471 * 10 9 7 27 27 H 1.08999 * 109.46495 * 300.00030 * 10 9 7 28 28 H 1.09007 * 109.47017 * 59.99866 * 14 12 11 29 29 H 1.09000 * 109.47116 * 300.00030 * 14 12 11 30 30 H 0.97002 * 119.99564 * 0.02562 * 15 14 12 31 31 H 1.07998 * 123.35183 * 0.27017 * 19 18 16 32 32 H 1.07999 * 122.44590 * 180.02562 * 20 19 18 33 33 H 1.07999 * 124.52176 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 8 1.5191 -4.9196 -0.0001 12 6 2.2501 -6.0454 -0.0007 13 8 3.4567 -5.9822 -0.0002 14 6 1.5660 -7.3881 -0.0008 15 7 2.5749 -8.4503 -0.0021 16 6 2.1926 -9.7427 -0.0019 17 8 1.0094 -10.0274 -0.0001 18 6 3.2022 -10.8055 -0.0026 19 6 2.9411 -12.1469 -0.0030 20 6 4.0766 -12.9218 -0.0043 21 6 5.2286 -12.2409 -0.0044 22 16 4.9431 -10.5588 -0.0036 23 1 -0.4849 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8904 27 1 2.8718 -3.6044 -0.8895 28 1 0.9428 -7.4782 -0.8906 29 1 0.9436 -7.4788 0.8894 30 1 3.5180 -8.2234 -0.0024 31 1 1.9421 -12.5573 -0.0070 32 1 4.0415 -14.0012 -0.0051 33 1 6.2082 -12.6954 -0.0057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046584404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:52 Heat of formation + Delta-G solvation = -96.689232 kcal Electronic energy + Delta-G solvation = -18424.534675 eV Core-core repulsion = 15156.042725 eV Total energy + Delta-G solvation = -3268.491949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52593 -39.66052 -37.82427 -36.47169 -34.70412 -33.41188 -30.85063 -30.29649 -28.30110 -25.36933 -24.71664 -21.99055 -21.19872 -20.71201 -19.76128 -19.12684 -17.32062 -16.74910 -16.56816 -16.27608 -15.90089 -15.78149 -15.39786 -14.80679 -14.46989 -13.94751 -13.81309 -13.24217 -13.13686 -12.67927 -12.65371 -12.61362 -12.40385 -11.33414 -11.33372 -11.12547 -10.83527 -10.79157 -10.47041 -10.44156 -9.77371 -9.71187 -9.56994 -9.35604 -9.22875 -8.98071 -8.48563 -6.14375 -4.19292 0.13225 1.09102 1.50507 2.02557 2.28101 2.41824 2.89500 3.23530 3.26004 3.32574 3.36644 4.34507 4.44469 4.61016 4.90992 4.92996 5.09126 5.12984 5.22280 5.22874 5.56134 5.77785 5.87501 5.92987 5.97558 5.98868 6.53938 6.77879 7.08871 7.48326 7.55897 7.76131 7.81220 7.98065 8.17962 8.86110 9.45413 10.97050 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.047302 B = 0.002510 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.804839 B =11152.378116 C =11718.434095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.349 6.349 12 C 0.454 3.546 13 O -0.517 6.517 14 C 0.125 3.875 15 N -0.718 5.718 16 C 0.596 3.404 17 O -0.526 6.526 18 C -0.269 4.269 19 C -0.053 4.053 20 C -0.152 4.152 21 C -0.230 4.230 22 S 0.212 5.788 23 H 0.264 0.736 24 H 0.029 0.971 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.410 0.590 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.799 -24.587 -0.013 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.264 6.264 12 C 0.296 3.704 13 O -0.407 6.407 14 C 0.001 3.999 15 N -0.374 5.374 16 C 0.382 3.618 17 O -0.404 6.404 18 C -0.389 4.389 19 C -0.086 4.086 20 C -0.183 4.183 21 C -0.368 4.368 22 S 0.480 5.520 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.248 0.752 31 H 0.173 0.827 32 H 0.164 0.836 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.098 -23.267 -0.008 24.983 hybrid contribution 0.232 -0.266 -0.011 0.353 sum 9.331 -23.533 -0.019 25.315 Atomic orbital electron populations 1.69972 1.06097 1.27079 1.49553 1.24990 0.94934 0.99434 0.94805 0.86456 0.79737 0.82759 0.78262 1.20455 1.21019 1.19727 1.20954 0.93159 0.90034 1.52471 0.92235 1.19195 0.94192 0.88901 0.99055 1.23756 0.96488 0.78238 1.01199 1.86522 1.42153 1.15645 1.82046 1.23249 0.86518 0.87619 0.72970 1.90626 1.15661 1.88027 1.46361 1.20686 0.90728 0.81730 1.06768 1.45613 1.11042 1.04796 1.75995 1.16832 0.87507 0.81103 0.76311 1.90860 1.16841 1.82795 1.49894 1.24550 0.97271 0.97859 1.19245 1.20824 1.00822 0.90655 0.96349 1.20064 0.90872 1.01863 1.05496 1.25402 1.03765 0.99070 1.08583 1.83321 0.98360 1.03470 1.66891 0.92638 0.95228 0.95204 0.92010 0.92024 0.86654 0.86646 0.75229 0.82712 0.83597 0.81269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 10 C 0.08 1.60 5.40 37.16 0.20 1.81 16 11 O -0.35 -6.54 10.22 -39.25 -0.40 -6.94 16 12 C 0.45 7.22 8.03 36.00 0.29 7.51 16 13 O -0.52 -9.10 15.42 -18.75 -0.29 -9.39 16 14 C 0.13 1.56 6.27 -5.19 -0.03 1.53 16 15 N -0.72 -8.63 5.52 -62.83 -0.35 -8.97 16 16 C 0.60 7.47 7.78 -12.90 -0.10 7.37 16 17 O -0.53 -8.01 16.84 5.19 0.09 -7.92 16 18 C -0.27 -2.76 6.45 -36.79 -0.24 -3.00 16 19 C -0.05 -0.47 10.01 -40.43 -0.40 -0.88 16 20 C -0.15 -1.04 10.15 -41.41 -0.42 -1.46 16 21 C -0.23 -1.49 10.92 29.18 0.32 -1.17 16 22 S 0.21 1.67 22.16 -107.50 -2.38 -0.71 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 27 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 28 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.41 4.71 6.55 -40.82 -0.27 4.44 16 31 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -32.03 314.85 -7.43 -39.46 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.61 Total: 0.05 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.95 Total: -1.11 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.39 Total: -34.29 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.60 Total: -24.25 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.38 Total: -0.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.03 -7.43 -39.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046584404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.226 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds