Wall clock time and date at job start Tue Mar 31 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00293 * 2 1 4 4 H 1.48505 * 109.46975 * 269.99723 * 3 2 1 5 5 H 1.48494 * 109.47227 * 29.99765 * 3 2 1 6 6 H 1.48503 * 109.47154 * 150.00063 * 3 2 1 7 7 C 1.37880 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47177 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47104 * 180.02562 * 10 9 7 12 12 C 1.34227 * 116.99894 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99886 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00088 * 179.97438 * 12 11 10 15 15 N 1.46504 * 109.47380 * 179.97438 * 14 12 11 16 16 C 1.34774 * 119.99745 * 179.97438 * 15 14 12 17 17 O 1.21702 * 120.00519 * 359.97438 * 16 15 14 18 18 C 1.46584 * 119.99515 * 180.02562 * 16 15 14 19 19 C 1.36652 * 125.45799 * 180.02562 * 18 16 15 20 20 C 1.37475 * 113.29531 * 179.97438 * 19 18 16 21 21 C 1.33814 * 115.10326 * 0.02562 * 20 19 18 22 22 S 1.70613 * 110.95401 * 359.97438 * 21 20 19 23 23 H 0.96996 * 119.99576 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46961 * 59.99949 * 9 7 2 25 25 H 1.09000 * 109.46814 * 299.99665 * 9 7 2 26 26 H 1.08995 * 109.46973 * 59.99471 * 10 9 7 27 27 H 1.08999 * 109.46495 * 300.00030 * 10 9 7 28 28 H 1.09007 * 109.47017 * 59.99866 * 14 12 11 29 29 H 1.09000 * 109.47116 * 300.00030 * 14 12 11 30 30 H 0.97002 * 119.99564 * 0.02562 * 15 14 12 31 31 H 1.07998 * 123.35183 * 0.27017 * 19 18 16 32 32 H 1.07999 * 122.44590 * 180.02562 * 20 19 18 33 33 H 1.07999 * 124.52176 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 8 1.5191 -4.9196 -0.0001 12 6 2.2501 -6.0454 -0.0007 13 8 3.4567 -5.9822 -0.0002 14 6 1.5660 -7.3881 -0.0008 15 7 2.5749 -8.4503 -0.0021 16 6 2.1926 -9.7427 -0.0019 17 8 1.0094 -10.0274 -0.0001 18 6 3.2022 -10.8055 -0.0026 19 6 2.9411 -12.1469 -0.0030 20 6 4.0766 -12.9218 -0.0043 21 6 5.2286 -12.2409 -0.0044 22 16 4.9431 -10.5588 -0.0036 23 1 -0.4849 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8904 27 1 2.8718 -3.6044 -0.8895 28 1 0.9428 -7.4782 -0.8906 29 1 0.9436 -7.4788 0.8894 30 1 3.5180 -8.2234 -0.0024 31 1 1.9421 -12.5573 -0.0070 32 1 4.0415 -14.0012 -0.0051 33 1 6.2082 -12.6954 -0.0057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046584404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:51 Heat of formation + Delta-G solvation = -117.210064 kcal Electronic energy + Delta-G solvation = -18425.424525 eV Core-core repulsion = 15156.042725 eV Total energy + Delta-G solvation = -3269.381800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.80337 -40.74047 -38.50326 -37.91235 -35.77997 -35.46678 -32.48497 -31.38685 -29.34561 -26.99968 -25.72310 -23.33727 -22.60435 -22.04097 -20.58768 -19.90859 -18.86514 -18.09825 -17.92603 -17.73030 -16.97454 -16.69392 -16.51739 -16.43805 -15.68154 -15.32287 -14.74485 -14.38360 -14.20917 -14.16987 -13.69555 -13.67265 -13.24122 -13.13811 -13.04154 -12.62912 -12.59199 -11.99077 -11.93964 -11.59508 -11.52726 -11.43664 -11.39299 -10.61689 -10.55908 -9.89047 -9.56803 -8.27325 -6.40537 -0.53268 0.46307 0.92542 0.95884 1.22980 1.36967 1.42665 1.43257 1.54926 2.06396 2.11841 2.40136 3.07465 3.43097 3.70881 4.12347 4.13669 4.21080 4.23094 4.26615 4.34256 4.54551 4.67919 4.89337 5.01871 5.20117 5.21341 5.35899 5.46122 5.46631 5.72534 6.05286 6.14774 6.51538 6.73599 6.85477 7.29412 8.85228 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.047302 B = 0.002510 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.804839 B =11152.378116 C =11718.434095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.028 3.972 10 C 0.091 3.909 11 O -0.358 6.358 12 C 0.459 3.541 13 O -0.531 6.531 14 C 0.133 3.867 15 N -0.717 5.717 16 C 0.597 3.403 17 O -0.561 6.561 18 C -0.306 4.306 19 C -0.050 4.050 20 C -0.159 4.159 21 C -0.214 4.214 22 S 0.218 5.782 23 H 0.268 0.732 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.413 0.587 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -25.641 -0.021 27.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.085 0.915 9 C -0.009 4.009 10 C 0.018 3.982 11 O -0.273 6.273 12 C 0.303 3.697 13 O -0.421 6.421 14 C 0.009 3.991 15 N -0.372 5.372 16 C 0.386 3.614 17 O -0.442 6.442 18 C -0.426 4.426 19 C -0.084 4.084 20 C -0.189 4.189 21 C -0.352 4.352 22 S 0.486 5.514 23 H 0.076 0.924 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.251 0.749 31 H 0.172 0.828 32 H 0.190 0.810 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 11.082 -24.338 -0.017 26.742 hybrid contribution -0.339 -0.076 -0.009 0.347 sum 10.743 -24.414 -0.026 26.673 Atomic orbital electron populations 1.70097 1.07839 1.28277 1.50407 1.25974 0.95832 1.03463 0.94141 0.85320 0.78550 0.77773 0.78647 1.19577 1.20555 1.18626 1.21373 0.93759 0.91138 1.52417 0.91496 1.19011 0.94452 0.90647 0.96833 1.23259 0.95029 0.78379 1.01527 1.86497 1.42378 1.15703 1.82719 1.23791 0.86350 0.87682 0.71894 1.90619 1.16403 1.88139 1.46974 1.20729 0.90640 0.79627 1.08098 1.45609 1.11037 1.04662 1.75926 1.17134 0.87575 0.81372 0.75316 1.90831 1.18333 1.83256 1.51770 1.24440 0.98216 0.97672 1.22305 1.21067 1.01733 0.90496 0.95146 1.20298 0.90092 1.03116 1.05412 1.25823 1.05061 0.98077 1.06192 1.83297 0.96480 1.04906 1.66754 0.92358 0.97452 0.97429 0.91626 0.91622 0.85265 0.85260 0.74878 0.82824 0.80981 0.78260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.55 -30.51 9.11 25.60 0.23 -30.28 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.46 5.35 29.85 0.16 1.62 16 10 C 0.09 3.88 5.40 71.98 0.39 4.27 16 11 O -0.36 -13.41 10.22 -51.38 -0.53 -13.93 16 12 C 0.46 14.35 8.03 71.23 0.57 14.92 16 13 O -0.53 -18.31 15.42 21.97 0.34 -17.97 16 14 C 0.13 3.22 6.27 85.63 0.54 3.76 16 15 N -0.72 -16.84 5.52 -470.90 -2.60 -19.44 16 16 C 0.60 14.88 7.78 86.42 0.67 15.56 16 17 O -0.56 -17.21 16.84 -4.36 -0.07 -17.29 16 18 C -0.31 -6.07 6.45 24.08 0.16 -5.92 16 19 C -0.05 -0.83 10.01 21.72 0.22 -0.61 16 20 C -0.16 -1.77 10.15 21.08 0.21 -1.56 16 21 C -0.21 -2.11 10.92 66.81 0.73 -1.39 16 22 S 0.22 3.09 22.16 -56.49 -1.25 1.84 16 23 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 24 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.07 2.74 8.13 -2.39 -0.02 2.72 16 27 H 0.07 2.73 8.13 -2.39 -0.02 2.72 16 28 H 0.13 2.83 8.14 -2.38 -0.02 2.81 16 29 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.41 9.24 6.55 -92.71 -0.61 8.63 16 31 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 33 H 0.20 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -68.95 314.85 3.07 -65.88 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.53 Total: 9.56 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 4.34 Total: 1.11 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: -2.32 Total: -74.27 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.26 Total: -49.19 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.25 Total: 1.84 kcal Total: -68.95 3.07 -65.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046584404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.329 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds