Wall clock time and date at job start Tue Mar 31 2020 05:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48506 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47161 * 300.00158 * 3 2 1 6 6 H 1.48499 * 109.47173 * 60.00316 * 3 2 1 7 7 C 1.38944 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00529 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00469 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99709 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00307 * 179.97438 * 10 9 7 13 13 C 1.50700 * 109.47237 * 179.97438 * 12 10 9 14 14 C 1.38259 * 119.99617 * 270.23596 * 13 12 10 15 15 C 1.38220 * 120.02067 * 180.27942 * 14 13 12 16 16 C 1.38238 * 120.00764 * 359.48336 * 15 14 13 17 17 C 1.38305 * 119.99297 * 0.26296 * 16 15 14 18 18 Br 1.89094 * 120.01387 * 179.97438 * 17 16 15 19 19 C 1.38191 * 119.99322 * 90.00300 * 13 12 10 20 20 H 0.96998 * 119.99665 * 0.02562 * 1 2 3 21 21 H 0.97006 * 119.99918 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46564 * 59.99574 * 12 10 9 23 23 H 1.09001 * 109.47096 * 299.99782 * 12 10 9 24 24 H 1.07997 * 119.99226 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.99998 * 179.76945 * 15 14 13 26 26 H 1.08007 * 120.00835 * 180.23480 * 16 15 14 27 27 H 1.08002 * 120.00579 * 359.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2035 -0.0001 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 6 2.2228 -6.0085 -0.0027 14 6 2.6757 -6.5301 -1.2003 15 6 3.5694 -7.5845 -1.2014 16 6 4.0190 -8.1110 -0.0049 17 6 3.5703 -7.5860 1.1934 18 35 4.1844 -8.3062 2.8305 19 6 2.6717 -6.5341 1.1939 20 1 -0.4849 0.8401 -0.0004 21 1 0.3533 -2.3906 -0.0016 22 1 0.6172 -4.9204 -0.8924 23 1 0.6166 -4.9209 0.8876 24 1 2.3280 -6.1163 -2.1353 25 1 3.9201 -7.9942 -2.1372 26 1 4.7203 -8.9324 -0.0057 27 1 2.3210 -6.1238 2.1294 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050040788.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:09 Heat of formation + Delta-G solvation = -20.250158 kcal Electronic energy + Delta-G solvation = -13916.579557 eV Core-core repulsion = 11299.097767 eV Total energy + Delta-G solvation = -2617.481789 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.40947 -37.84534 -34.04963 -32.76733 -31.80508 -31.20694 -29.20265 -27.53931 -24.64899 -22.33276 -21.44562 -19.19660 -17.91549 -16.57666 -15.92597 -15.42650 -14.92235 -14.52960 -13.91642 -13.70279 -13.28799 -13.11018 -12.88738 -12.31221 -11.62757 -11.59047 -11.12248 -11.06636 -10.87951 -10.69533 -10.36167 -10.25931 -10.20174 -9.55520 -8.78956 -8.57332 -8.30069 -8.00471 -6.44892 -3.85854 1.29128 1.47030 1.71757 3.14342 3.25404 3.32748 3.76645 3.86221 4.17431 4.82585 4.95154 5.11559 5.19849 5.22691 5.45361 5.52622 5.65614 5.87072 6.01579 6.06003 6.31017 6.35752 6.46657 6.74851 6.98579 7.52779 8.02287 8.56696 9.14362 9.50157 10.01198 10.72703 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.032026 B = 0.003978 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.092116 B = 7036.481692 C = 7448.063951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.588 6.588 12 C -0.100 4.100 13 C -0.035 4.035 14 C -0.091 4.091 15 C -0.115 4.115 16 C -0.102 4.102 17 C -0.088 4.088 18 Br -0.064 7.064 19 C -0.078 4.078 20 H 0.271 0.729 21 H 0.393 0.607 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.126 0.874 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 -16.961 1.821 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.227 3.773 11 O -0.472 6.472 12 C -0.141 4.141 13 C -0.036 4.036 14 C -0.109 4.109 15 C -0.134 4.134 16 C -0.122 4.122 17 C -0.167 4.167 18 Br 0.021 6.979 19 C -0.098 4.098 20 H 0.081 0.919 21 H 0.227 0.773 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.144 0.856 25 H 0.146 0.854 26 H 0.145 0.855 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.722 -17.056 2.443 17.627 hybrid contribution -0.342 1.115 -0.343 1.215 sum 3.380 -15.941 2.100 16.430 Atomic orbital electron populations 1.69620 1.05937 1.28122 1.50493 1.25268 0.95640 0.99748 0.97237 0.85807 0.79744 0.81105 0.77749 1.19199 1.20711 1.20700 1.19770 0.93422 0.82218 1.47553 0.87859 1.41891 1.09242 1.04570 1.64027 1.19707 0.88259 0.84521 0.84769 1.90555 1.13774 1.87190 1.55722 1.20634 0.97121 0.92180 1.04116 1.19423 0.96874 0.94773 0.92559 1.21150 0.96487 0.95335 0.97960 1.21054 0.97875 0.97025 0.97474 1.20974 0.99959 1.00263 0.91037 1.21638 1.02911 1.00900 0.91244 1.96644 1.88504 1.84538 1.28233 1.20941 0.95849 0.94224 0.98740 0.91869 0.77347 0.89058 0.89164 0.85558 0.85420 0.85533 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 13.05 55.50 0.72 -23.56 15 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 15 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 15 8 H 0.10 3.02 7.16 -52.48 -0.38 2.65 15 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.09 15 10 C 0.44 10.25 7.78 -10.99 -0.09 10.17 15 11 O -0.59 -15.90 15.61 5.55 0.09 -15.82 15 12 C -0.10 -1.70 5.83 -29.04 -0.17 -1.87 15 13 C -0.03 -0.58 4.37 -104.63 -0.46 -1.03 15 14 C -0.09 -1.35 9.70 -39.58 -0.38 -1.74 15 15 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 15 16 C -0.10 -1.35 9.79 -39.56 -0.39 -1.74 15 17 C -0.09 -1.29 6.22 -39.52 -0.25 -1.53 15 18 Br -0.06 -0.83 33.70 -68.01 -2.29 -3.12 15 19 C -0.08 -1.25 9.44 -39.56 -0.37 -1.62 15 20 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 21 H 0.39 9.33 7.90 -40.82 -0.32 9.00 15 22 H 0.09 1.33 8.09 -51.93 -0.42 0.91 15 23 H 0.09 1.35 8.09 -51.93 -0.42 0.93 15 24 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 25 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 26 H 0.13 1.37 8.06 -52.48 -0.42 0.95 15 27 H 0.13 1.99 8.06 -52.49 -0.42 1.57 15 LS Contribution 268.65 15.07 4.05 4.05 Total: -1.00 -30.84 268.65 -7.62 -38.46 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.36 Total: 7.37 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.74 Total: -9.22 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.67 Total: -37.65 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -2.29 Total: -3.12 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.84 -7.62 -38.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050040788.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.211 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds