Wall clock time and date at job start Tue Mar 31 2020 05:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48506 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47161 * 300.00158 * 3 2 1 6 6 H 1.48499 * 109.47173 * 60.00316 * 3 2 1 7 7 C 1.38944 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00529 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00469 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99709 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00307 * 179.97438 * 10 9 7 13 13 C 1.50700 * 109.47237 * 179.97438 * 12 10 9 14 14 C 1.38259 * 119.99617 * 270.23596 * 13 12 10 15 15 C 1.38220 * 120.02067 * 180.27942 * 14 13 12 16 16 C 1.38238 * 120.00764 * 359.48336 * 15 14 13 17 17 C 1.38305 * 119.99297 * 0.26296 * 16 15 14 18 18 Br 1.89094 * 120.01387 * 179.97438 * 17 16 15 19 19 C 1.38191 * 119.99322 * 90.00300 * 13 12 10 20 20 H 0.96998 * 119.99665 * 0.02562 * 1 2 3 21 21 H 0.97006 * 119.99918 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46564 * 59.99574 * 12 10 9 23 23 H 1.09001 * 109.47096 * 299.99782 * 12 10 9 24 24 H 1.07997 * 119.99226 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.99998 * 179.76945 * 15 14 13 26 26 H 1.08007 * 120.00835 * 180.23480 * 16 15 14 27 27 H 1.08002 * 120.00579 * 359.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2035 -0.0001 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 6 2.2228 -6.0085 -0.0027 14 6 2.6757 -6.5301 -1.2003 15 6 3.5694 -7.5845 -1.2014 16 6 4.0190 -8.1110 -0.0049 17 6 3.5703 -7.5860 1.1934 18 35 4.1844 -8.3062 2.8305 19 6 2.6717 -6.5341 1.1939 20 1 -0.4849 0.8401 -0.0004 21 1 0.3533 -2.3906 -0.0016 22 1 0.6172 -4.9204 -0.8924 23 1 0.6166 -4.9209 0.8876 24 1 2.3280 -6.1163 -2.1353 25 1 3.9201 -7.9942 -2.1372 26 1 4.7203 -8.9324 -0.0057 27 1 2.3210 -6.1238 2.1294 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050040788.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:09 Heat of formation + Delta-G solvation = -39.075684 kcal Electronic energy + Delta-G solvation = -13917.395893 eV Core-core repulsion = 11299.097767 eV Total energy + Delta-G solvation = -2618.298125 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74917 -39.50141 -36.01728 -34.06203 -33.26154 -32.85013 -30.32060 -28.94505 -26.53858 -23.43618 -22.74733 -20.93653 -19.89533 -17.75763 -17.68038 -16.65166 -16.54402 -16.11227 -15.59023 -15.34536 -14.59743 -14.39331 -14.13663 -13.77793 -13.50766 -13.12313 -12.80043 -12.43159 -12.22824 -12.09067 -12.02239 -11.77310 -11.52690 -11.26295 -10.45561 -10.02586 -9.79498 -9.58202 -8.47849 -5.96626 0.17432 0.34937 0.63478 1.35540 1.41298 1.55180 2.03928 2.28853 2.63318 3.19508 3.37317 3.70636 3.90841 4.11985 4.34155 4.35198 4.48955 4.54275 4.67019 4.86411 5.00575 5.22898 5.37961 5.40729 5.58899 5.88427 6.00231 6.57875 7.11269 7.54721 8.10145 8.69553 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.032026 B = 0.003978 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.092116 B = 7036.481692 C = 7448.063951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.442 3.558 11 O -0.629 6.629 12 C -0.087 4.087 13 C -0.060 4.060 14 C -0.103 4.103 15 C -0.111 4.111 16 C -0.100 4.100 17 C -0.101 4.101 18 Br -0.052 7.052 19 C -0.096 4.096 20 H 0.278 0.722 21 H 0.398 0.602 22 H 0.118 0.882 23 H 0.110 0.890 24 H 0.138 0.862 25 H 0.162 0.838 26 H 0.153 0.847 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -17.717 1.291 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.095 0.905 9 N -0.208 5.208 10 C 0.230 3.770 11 O -0.516 6.516 12 C -0.127 4.127 13 C -0.062 4.062 14 C -0.122 4.122 15 C -0.129 4.129 16 C -0.120 4.120 17 C -0.181 4.181 18 Br 0.033 6.967 19 C -0.116 4.116 20 H 0.087 0.913 21 H 0.232 0.768 22 H 0.137 0.863 23 H 0.129 0.871 24 H 0.155 0.845 25 H 0.180 0.820 26 H 0.170 0.830 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.783 -17.825 1.916 18.323 hybrid contribution -0.332 1.251 -0.167 1.305 sum 3.451 -16.574 1.749 17.020 Atomic orbital electron populations 1.69673 1.06765 1.29261 1.50277 1.26014 0.96534 1.02335 0.96262 0.84904 0.78017 0.77236 0.78392 1.19915 1.19470 1.19610 1.19693 0.92653 0.84083 1.49898 0.90462 1.41959 1.09401 1.04643 1.64826 1.20765 0.88088 0.85938 0.82230 1.90518 1.15998 1.88128 1.56990 1.20563 0.97084 0.88663 1.06402 1.19494 0.97903 0.95247 0.93508 1.21433 0.96902 0.95982 0.97840 1.21458 0.96608 0.95974 0.98890 1.21365 0.99648 1.00446 0.90534 1.21849 1.02845 1.00830 0.92537 1.96642 1.88250 1.84157 1.27646 1.21029 0.96818 0.95193 0.98590 0.91258 0.76792 0.86348 0.87141 0.84459 0.82023 0.82953 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.23 13.05 21.66 0.28 -48.95 15 2 C -0.01 -0.61 5.50 84.92 0.47 -0.15 15 3 Si 0.99 42.86 29.55 68.60 2.03 44.89 15 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 7 C -0.33 -18.91 9.68 84.04 0.81 -18.10 15 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 15 9 N -0.57 -29.03 5.29 -306.98 -1.62 -30.65 15 10 C 0.44 20.72 7.78 87.66 0.68 21.40 15 11 O -0.63 -34.81 15.61 -3.07 -0.05 -34.85 15 12 C -0.09 -2.89 5.83 29.10 0.17 -2.72 15 13 C -0.06 -1.94 4.37 -19.87 -0.09 -2.02 15 14 C -0.10 -2.90 9.70 22.27 0.22 -2.68 15 15 C -0.11 -2.58 10.05 22.27 0.22 -2.36 15 16 C -0.10 -2.41 9.79 22.29 0.22 -2.19 15 17 C -0.10 -2.85 6.22 22.31 0.14 -2.71 15 18 Br -0.05 -1.29 33.70 -20.37 -0.69 -1.97 15 19 C -0.10 -3.05 9.44 22.29 0.21 -2.84 15 20 H 0.28 13.89 8.31 -92.71 -0.77 13.12 15 21 H 0.40 19.04 7.90 -92.70 -0.73 18.31 15 22 H 0.12 3.25 8.09 -2.39 -0.02 3.23 15 23 H 0.11 3.19 8.09 -2.39 -0.02 3.17 15 24 H 0.14 3.43 8.06 -2.91 -0.02 3.41 15 25 H 0.16 2.60 8.06 -2.91 -0.02 2.57 15 26 H 0.15 2.81 8.06 -2.91 -0.02 2.78 15 27 H 0.12 3.88 8.06 -2.91 -0.02 3.86 15 Total: -1.00 -66.52 268.65 3.47 -63.05 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.47 Total: 22.86 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.05 Total: -14.37 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.34 Total: -79.60 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.05 Total: -34.85 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 35 Polarization: -1.29 SS G_CDS: -0.69 Total: -1.97 kcal Total: -66.52 3.47 -63.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050040788.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.978 kcal (2) G-P(sol) polarization free energy of solvation -66.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds