Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48503 * 109.46687 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47458 * 299.99948 * 3 2 1 6 6 H 1.48506 * 109.47054 * 60.00485 * 3 2 1 7 7 C 1.37872 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00255 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00111 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.39901 * 66.46422 * 9 7 2 11 11 O 1.42095 * 106.40378 * 293.54374 * 9 7 2 12 12 N 1.65603 * 107.21920 * 180.02562 * 9 7 2 13 13 C 1.46498 * 119.99778 * 65.00645 * 12 9 7 14 14 C 1.53000 * 109.47058 * 165.00132 * 13 12 9 15 15 H 1.09002 * 110.66760 * 59.29571 * 14 13 12 16 16 C 1.54706 * 110.74686 * 182.50907 * 14 13 12 17 17 C 1.51652 * 101.90702 * 143.86153 * 16 14 13 18 18 C 1.37745 * 132.18111 * 164.30132 * 17 16 14 19 19 C 1.38349 * 119.97791 * 180.32882 * 18 17 16 20 20 C 1.38290 * 119.76358 * 0.02562 * 19 18 17 21 21 C 1.37932 * 120.35302 * 359.84939 * 20 19 18 22 22 C 1.38873 * 107.02801 * 344.32834 * 17 16 14 23 23 O 1.36126 * 111.25894 * 359.34842 * 22 17 16 24 24 H 0.97002 * 119.99556 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99942 * 244.99946 * 12 9 7 26 26 H 1.08994 * 109.47530 * 44.99541 * 13 12 9 27 27 H 1.09004 * 109.46623 * 284.99805 * 13 12 9 28 28 H 1.08999 * 110.94569 * 262.01819 * 16 14 13 29 29 H 1.09006 * 110.94429 * 25.67371 * 16 14 13 30 30 H 1.07997 * 120.00692 * 0.35461 * 18 17 16 31 31 H 1.07991 * 120.11754 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.82215 * 179.86569 * 20 19 18 33 33 H 1.07999 * 119.87821 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1234 -2.7200 -0.0005 10 8 0.4509 -2.7949 -1.2501 11 8 0.4517 -2.7955 1.2493 12 7 2.2482 -3.9354 -0.0005 13 6 3.1391 -4.1089 1.1494 14 6 3.8045 -5.4847 1.0760 15 1 4.3777 -5.5862 0.1545 16 6 4.7051 -5.7245 2.3109 17 6 4.5016 -7.2059 2.5636 18 6 5.2028 -8.1202 3.3185 19 6 4.7889 -9.4395 3.3663 20 6 3.6713 -9.8346 2.6541 21 6 2.9662 -8.9201 1.8997 22 6 3.3739 -7.5892 1.8495 23 8 2.8274 -6.5336 1.1862 24 1 -0.4849 0.8401 0.0004 25 1 2.3170 -4.5326 -0.7619 26 1 2.5620 -4.0331 2.0709 27 1 3.9052 -3.3336 1.1356 28 1 5.7482 -5.5082 2.0803 29 1 4.3655 -5.1333 3.1615 30 1 6.0750 -7.8072 3.8731 31 1 5.3366 -10.1581 3.9577 32 1 3.3486 -10.8647 2.6891 33 1 2.0943 -9.2370 1.3469 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051087329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = -128.559981 kcal Electronic energy + Delta-G solvation = -19673.238465 eV Core-core repulsion = 16403.364496 eV Total energy + Delta-G solvation = -3269.873969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.10905 -38.53322 -37.42423 -36.16159 -36.06121 -35.16090 -33.56472 -30.92807 -30.55978 -28.26764 -26.47449 -23.48374 -22.77761 -22.45968 -21.01522 -19.40795 -18.46821 -18.26863 -17.67907 -17.58081 -16.91706 -16.38437 -16.00869 -15.78116 -15.21474 -15.07803 -14.67792 -14.14814 -14.01799 -13.98956 -13.81992 -13.40567 -13.21695 -13.02756 -12.99350 -12.60759 -12.52861 -12.44515 -12.25141 -12.08493 -11.74747 -11.66845 -11.26113 -11.01164 -10.24683 -9.81301 -9.07920 -8.75134 -7.49056 0.32239 0.37752 0.44768 1.35796 1.36466 1.54550 2.20619 2.24638 2.58829 2.79094 2.97916 3.37574 3.56182 3.73501 3.88040 4.00401 4.09143 4.23281 4.34035 4.45839 4.56100 4.57961 4.63283 4.68778 4.86788 4.94322 5.03706 5.17422 5.30123 5.42204 5.50528 5.57705 5.76473 5.90375 6.26499 6.34587 6.78177 8.21932 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.036662 B = 0.003989 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.546735 B = 7018.482156 C = 7508.709912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.066 3.934 3 Si 0.996 3.004 4 H -0.241 1.241 5 H -0.262 1.262 6 H -0.260 1.260 7 C -1.036 5.036 8 H 0.128 0.872 9 S 2.718 3.282 10 O -1.046 7.046 11 O -1.047 7.047 12 N -1.121 6.121 13 C 0.123 3.877 14 C 0.075 3.925 15 H 0.112 0.888 16 C -0.099 4.099 17 C -0.185 4.185 18 C -0.074 4.074 19 C -0.150 4.150 20 C -0.087 4.087 21 C -0.161 4.161 22 C 0.070 3.930 23 O -0.326 6.326 24 H 0.299 0.701 25 H 0.415 0.585 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.702 -14.207 6.269 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.146 4.146 3 Si 0.814 3.186 4 H -0.164 1.164 5 H -0.187 1.187 6 H -0.185 1.185 7 C -1.170 5.170 8 H 0.146 0.854 9 S 2.819 3.181 10 O -1.037 7.037 11 O -1.036 7.036 12 N -0.880 5.880 13 C -0.004 4.004 14 C 0.018 3.982 15 H 0.130 0.870 16 C -0.136 4.136 17 C -0.186 4.186 18 C -0.092 4.092 19 C -0.168 4.168 20 C -0.105 4.105 21 C -0.180 4.180 22 C 0.025 3.975 23 O -0.241 6.241 24 H 0.109 0.891 25 H 0.249 0.751 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.145 0.855 29 H 0.117 0.883 30 H 0.169 0.831 31 H 0.176 0.824 32 H 0.174 0.826 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.331 -14.132 6.340 21.102 hybrid contribution 0.130 0.912 -0.539 1.067 sum 14.461 -13.220 5.802 20.434 Atomic orbital electron populations 1.70018 1.08989 1.32323 1.41460 1.26108 0.95384 1.05656 0.87492 0.85024 0.79689 0.74722 0.79207 1.16407 1.18655 1.18463 1.30901 1.07455 1.12039 1.66654 0.85396 0.99924 0.72667 0.74066 0.71393 1.93306 1.74928 1.88481 1.46962 1.93299 1.74676 1.88301 1.47341 1.55269 1.55310 1.49744 1.27674 1.21549 0.94140 0.96111 0.88559 1.23777 0.87979 0.85512 1.00964 0.87025 1.21859 1.02506 0.91893 0.97347 1.21066 0.98700 0.96557 1.02281 1.20697 0.99396 0.92350 0.96730 1.21458 0.97791 0.96211 1.01292 1.21230 0.94667 0.99862 0.94718 1.20593 1.03449 0.89326 1.04653 1.20098 0.94052 0.89482 0.93896 1.86908 1.38935 1.24490 1.73756 0.89131 0.75134 0.91639 0.87158 0.85529 0.88329 0.83132 0.82436 0.82597 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.93 13.19 21.45 0.28 -53.64 16 2 C 0.07 3.66 5.46 84.65 0.46 4.12 16 3 Si 1.00 40.56 29.54 68.60 2.03 42.59 16 4 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 7 C -1.04 -56.23 9.72 67.73 0.66 -55.57 16 8 H 0.13 6.04 7.81 -2.91 -0.02 6.02 16 9 S 2.72 149.02 5.02 -56.49 -0.28 148.73 16 10 O -1.05 -64.35 18.02 -128.00 -2.31 -66.65 16 11 O -1.05 -64.43 17.49 -128.00 -2.24 -66.67 16 12 N -1.12 -45.30 5.96 -187.49 -1.12 -46.42 16 13 C 0.12 4.01 5.91 86.38 0.51 4.52 16 14 C 0.07 1.98 3.69 31.18 0.12 2.10 16 15 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 16 C -0.10 -2.01 6.65 30.73 0.20 -1.81 16 17 C -0.19 -4.24 6.27 -19.52 -0.12 -4.36 16 18 C -0.07 -1.28 10.03 22.18 0.22 -1.06 16 19 C -0.15 -2.28 10.07 22.31 0.22 -2.06 16 20 C -0.09 -1.52 10.02 22.21 0.22 -1.30 16 21 C -0.16 -3.90 10.06 22.45 0.23 -3.67 16 22 C 0.07 1.97 7.04 22.68 0.16 2.13 16 23 O -0.33 -10.79 10.78 -94.98 -1.02 -11.81 16 24 H 0.30 16.07 8.31 -92.71 -0.77 15.29 16 25 H 0.42 14.91 8.65 -96.74 -0.84 14.08 16 26 H 0.07 2.40 7.75 -2.39 -0.02 2.38 16 27 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.13 1.72 8.14 -2.39 -0.02 1.71 16 29 H 0.10 1.98 7.93 -2.38 -0.02 1.96 16 30 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 31 H 0.16 1.36 8.06 -2.92 -0.02 1.34 16 32 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -81.95 303.33 -1.48 -83.42 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.30 Total: 27.40 kcal Atomic # 6 Polarization: -59.84 SS G_CDS: 2.88 Total: -56.95 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -0.83 Total: -100.06 kcal Atomic # 8 Polarization: -139.57 SS G_CDS: -5.57 Total: -145.14 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 149.02 SS G_CDS: -0.28 Total: 148.73 kcal Total: -81.95 -1.48 -83.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051087329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.135 kcal (2) G-P(sol) polarization free energy of solvation -81.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds