Wall clock time and date at job start Tue Mar 31 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00270 * 2 1 4 4 H 1.48496 * 109.47042 * 269.99985 * 3 2 1 5 5 H 1.48497 * 109.46581 * 29.99955 * 3 2 1 6 6 H 1.48500 * 109.47012 * 149.99913 * 3 2 1 7 7 C 1.37879 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99634 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00180 * 180.02562 * 7 2 1 10 10 O 1.42095 * 106.40126 * 66.46394 * 9 7 2 11 11 O 1.42092 * 106.40291 * 293.53936 * 9 7 2 12 12 N 1.65609 * 107.21719 * 180.02562 * 9 7 2 13 13 C 1.46493 * 119.99927 * 64.60413 * 12 9 7 14 14 H 1.08995 * 109.41157 * 5.36174 * 13 12 9 15 15 C 1.53082 * 109.44085 * 245.46194 * 13 12 9 16 16 C 1.53404 * 108.28127 * 191.68198 * 15 13 12 17 17 O 1.42839 * 108.37904 * 64.74576 * 16 15 13 18 18 C 1.35841 * 117.87019 * 310.89219 * 17 16 15 19 19 C 1.39141 * 118.50041 * 196.78429 * 18 17 16 20 20 C 1.37974 * 120.21894 * 180.02562 * 19 18 17 21 21 C 1.38294 * 119.95279 * 0.36440 * 20 19 18 22 22 C 1.38103 * 119.98409 * 359.73897 * 21 20 19 23 23 C 1.38368 * 121.80931 * 17.06405 * 18 17 16 24 24 H 0.96998 * 119.99593 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99610 * 244.60503 * 12 9 7 26 26 H 1.09005 * 109.69847 * 311.38072 * 15 13 12 27 27 H 1.09000 * 109.69843 * 71.93733 * 15 13 12 28 28 H 1.09002 * 109.67714 * 184.45029 * 16 15 13 29 29 H 1.08993 * 109.68244 * 304.95766 * 16 15 13 30 30 H 1.08007 * 119.89331 * 0.42575 * 19 18 17 31 31 H 1.07997 * 120.02102 * 180.17746 * 20 19 18 32 32 H 1.08003 * 120.00094 * 179.76216 * 21 20 19 33 33 H 1.07998 * 119.84093 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1673 -0.6495 1.2510 11 8 4.1683 -0.6500 -1.2484 12 7 4.2567 -2.7760 0.0011 13 6 3.9542 -3.6364 -1.1453 14 1 3.4905 -3.0416 -1.9323 15 6 2.9921 -4.7448 -0.7106 16 6 2.9231 -5.7893 -1.8320 17 8 4.2102 -6.3948 -1.9633 18 6 5.2914 -5.5766 -2.0452 19 6 6.4881 -6.1034 -2.5212 20 6 7.6086 -5.3042 -2.6186 21 6 7.5456 -3.9770 -2.2352 22 6 6.3601 -3.4513 -1.7603 23 6 5.2310 -4.2477 -1.6647 24 1 -0.4849 0.8401 -0.0004 25 1 4.7441 -3.1327 0.7601 26 1 3.3581 -5.2112 0.2041 27 1 2.0014 -4.3244 -0.5376 28 1 2.1838 -6.5498 -1.5803 29 1 2.6470 -5.3049 -2.7685 30 1 6.5384 -7.1397 -2.8215 31 1 8.5350 -5.7157 -2.9912 32 1 8.4232 -3.3517 -2.3075 33 1 6.3133 -2.4144 -1.4620 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051987860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:58 Heat of formation + Delta-G solvation = -94.111883 kcal Electronic energy + Delta-G solvation = -20597.075033 eV Core-core repulsion = 17328.694846 eV Total energy + Delta-G solvation = -3268.380187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61130 -37.37699 -35.98307 -35.50640 -34.50228 -33.09744 -31.11187 -30.36665 -29.91680 -26.47609 -24.77708 -23.50726 -22.19665 -20.02166 -19.23647 -17.89100 -17.40738 -16.93739 -16.51627 -15.90853 -15.63802 -15.02287 -14.77067 -14.05885 -13.84628 -13.80524 -13.40144 -13.23831 -13.15643 -12.89739 -12.51600 -11.90073 -11.64271 -11.46176 -11.37125 -11.19138 -10.89135 -10.77678 -10.67971 -10.55363 -10.34895 -9.86018 -9.38449 -9.26415 -8.87495 -8.61213 -8.06110 -6.86275 -5.41091 1.37379 1.53183 2.01690 3.03568 3.13853 3.22916 3.35699 3.84222 3.90813 4.23708 4.54077 4.73782 4.80943 4.88586 5.06201 5.16551 5.23672 5.30563 5.42701 5.46351 5.61019 5.69086 5.73068 5.94836 6.05265 6.12390 6.24480 6.37584 6.51858 6.59078 6.71372 6.87920 7.41301 7.51487 7.64480 8.13212 8.64479 10.25704 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.006180 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.423791 B = 4529.868239 C = 5229.102657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.154 3.846 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.221 1.221 7 C -1.016 5.016 8 H 0.122 0.878 9 S 2.671 3.329 10 O -1.006 7.006 11 O -1.009 7.009 12 N -1.113 6.113 13 C 0.205 3.795 14 H 0.108 0.892 15 C -0.174 4.174 16 C 0.063 3.937 17 O -0.319 6.319 18 C 0.140 3.860 19 C -0.158 4.158 20 C -0.088 4.088 21 C -0.159 4.159 22 C -0.063 4.063 23 C -0.166 4.166 24 H 0.281 0.719 25 H 0.407 0.593 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -10.956 -4.173 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.066 4.066 3 Si 0.621 3.379 4 H -0.169 1.169 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.150 5.150 8 H 0.140 0.860 9 S 2.773 3.227 10 O -0.997 6.997 11 O -0.999 6.999 12 N -0.866 5.866 13 C 0.097 3.903 14 H 0.126 0.874 15 C -0.213 4.213 16 C -0.013 4.013 17 O -0.234 6.234 18 C 0.094 3.906 19 C -0.177 4.177 20 C -0.106 4.106 21 C -0.177 4.177 22 C -0.082 4.082 23 C -0.169 4.169 24 H 0.092 0.908 25 H 0.239 0.761 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.830 -10.239 -4.321 14.194 hybrid contribution -0.429 0.539 0.415 0.804 sum 8.401 -9.699 -3.906 13.413 Atomic orbital electron populations 1.69976 1.06560 1.29122 1.39390 1.24415 0.94794 0.98806 0.88591 0.87868 0.83592 0.84570 0.81875 1.16947 1.17855 1.14267 1.30445 1.15408 1.02197 1.66972 0.85968 1.01523 0.77487 0.70362 0.73367 1.93483 1.85541 1.75667 1.44975 1.93420 1.85022 1.75913 1.45516 1.55617 1.73371 1.31122 1.26500 1.19314 0.90979 0.91589 0.88463 0.87413 1.22738 1.02451 0.96848 0.99295 1.23027 0.82429 0.96918 0.98899 1.85946 1.14069 1.34904 1.88444 1.18708 0.87607 0.88696 0.95611 1.20518 0.91396 1.00865 1.04903 1.20895 0.97471 0.93725 0.98503 1.21046 0.98129 0.95717 1.02805 1.21051 0.91539 0.99922 0.95673 1.20231 0.97739 0.93467 1.05476 0.90839 0.76095 0.89957 0.88202 0.87201 0.91291 0.85496 0.85710 0.85951 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.11 13.96 55.43 0.77 -22.34 16 2 C 0.15 4.31 5.47 -17.82 -0.10 4.21 16 3 Si 0.80 20.25 26.54 -169.99 -4.51 15.74 16 4 H -0.25 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.25 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.22 -5.70 5.61 56.52 0.32 -5.38 16 7 C -1.02 -27.21 10.25 30.60 0.31 -26.90 16 8 H 0.12 3.23 7.77 -52.48 -0.41 2.82 16 9 S 2.67 64.38 4.12 -107.50 -0.44 63.93 16 10 O -1.01 -26.47 16.02 -57.17 -0.92 -27.39 16 11 O -1.01 -25.87 16.34 -57.17 -0.93 -26.81 16 12 N -1.11 -20.70 4.60 -5.82 -0.03 -20.72 16 13 C 0.20 3.47 2.93 -69.01 -0.20 3.26 16 14 H 0.11 1.95 7.59 -51.93 -0.39 1.56 16 15 C -0.17 -2.48 5.80 -26.48 -0.15 -2.63 16 16 C 0.06 0.76 7.03 37.37 0.26 1.03 16 17 O -0.32 -4.44 10.27 -19.24 -0.20 -4.64 16 18 C 0.14 2.04 6.47 -39.20 -0.25 1.79 16 19 C -0.16 -2.01 9.94 -39.34 -0.39 -2.40 16 20 C -0.09 -1.03 10.04 -39.66 -0.40 -1.42 16 21 C -0.16 -2.08 10.04 -39.61 -0.40 -2.47 16 22 C -0.06 -1.00 9.27 -39.53 -0.37 -1.36 16 23 C -0.17 -2.65 5.56 -104.44 -0.58 -3.23 16 24 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.41 6.63 8.96 -34.47 -0.31 6.32 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.10 1.45 7.85 -51.93 -0.41 1.04 16 28 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.13 2.17 7.70 -52.49 -0.40 1.76 16 LS Contribution 291.24 15.07 4.39 4.39 Total: -1.00 -32.16 291.24 -7.81 -39.97 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.68 Total: 7.99 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -2.26 Total: -30.13 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.75 Total: -43.06 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -2.05 Total: -58.83 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.51 Total: 15.74 kcal Atomic # 16 Polarization: 64.38 SS G_CDS: -0.44 Total: 63.93 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.16 -7.81 -39.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051987860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.137 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds