Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00270 * 2 1 4 4 H 1.48496 * 109.47042 * 269.99985 * 3 2 1 5 5 H 1.48497 * 109.46581 * 29.99955 * 3 2 1 6 6 H 1.48500 * 109.47012 * 149.99913 * 3 2 1 7 7 C 1.37879 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99634 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00180 * 180.02562 * 7 2 1 10 10 O 1.42095 * 106.40126 * 66.46394 * 9 7 2 11 11 O 1.42092 * 106.40291 * 293.53936 * 9 7 2 12 12 N 1.65609 * 107.21719 * 180.02562 * 9 7 2 13 13 C 1.46493 * 119.99927 * 64.60413 * 12 9 7 14 14 H 1.08995 * 109.41157 * 5.36174 * 13 12 9 15 15 C 1.53082 * 109.44085 * 245.46194 * 13 12 9 16 16 C 1.53404 * 108.28127 * 191.68198 * 15 13 12 17 17 O 1.42839 * 108.37904 * 64.74576 * 16 15 13 18 18 C 1.35841 * 117.87019 * 310.89219 * 17 16 15 19 19 C 1.39141 * 118.50041 * 196.78429 * 18 17 16 20 20 C 1.37974 * 120.21894 * 180.02562 * 19 18 17 21 21 C 1.38294 * 119.95279 * 0.36440 * 20 19 18 22 22 C 1.38103 * 119.98409 * 359.73897 * 21 20 19 23 23 C 1.38368 * 121.80931 * 17.06405 * 18 17 16 24 24 H 0.96998 * 119.99593 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99610 * 244.60503 * 12 9 7 26 26 H 1.09005 * 109.69847 * 311.38072 * 15 13 12 27 27 H 1.09000 * 109.69843 * 71.93733 * 15 13 12 28 28 H 1.09002 * 109.67714 * 184.45029 * 16 15 13 29 29 H 1.08993 * 109.68244 * 304.95766 * 16 15 13 30 30 H 1.08007 * 119.89331 * 0.42575 * 19 18 17 31 31 H 1.07997 * 120.02102 * 180.17746 * 20 19 18 32 32 H 1.08003 * 120.00094 * 179.76216 * 21 20 19 33 33 H 1.07998 * 119.84093 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1673 -0.6495 1.2510 11 8 4.1683 -0.6500 -1.2484 12 7 4.2567 -2.7760 0.0011 13 6 3.9542 -3.6364 -1.1453 14 1 3.4905 -3.0416 -1.9323 15 6 2.9921 -4.7448 -0.7106 16 6 2.9231 -5.7893 -1.8320 17 8 4.2102 -6.3948 -1.9633 18 6 5.2914 -5.5766 -2.0452 19 6 6.4881 -6.1034 -2.5212 20 6 7.6086 -5.3042 -2.6186 21 6 7.5456 -3.9770 -2.2352 22 6 6.3601 -3.4513 -1.7603 23 6 5.2310 -4.2477 -1.6647 24 1 -0.4849 0.8401 -0.0004 25 1 4.7441 -3.1327 0.7601 26 1 3.3581 -5.2112 0.2041 27 1 2.0014 -4.3244 -0.5376 28 1 2.1838 -6.5498 -1.5803 29 1 2.6470 -5.3049 -2.7685 30 1 6.5384 -7.1397 -2.8215 31 1 8.5350 -5.7157 -2.9912 32 1 8.4232 -3.3517 -2.3075 33 1 6.3133 -2.4144 -1.4620 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051987860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = -118.375988 kcal Electronic energy + Delta-G solvation = -20598.127204 eV Core-core repulsion = 17328.694846 eV Total energy + Delta-G solvation = -3269.432358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69874 -38.40343 -37.78915 -37.05780 -36.54245 -35.21209 -32.38250 -31.44262 -31.01889 -28.57762 -25.95247 -24.60235 -23.29242 -21.35574 -20.96897 -19.57771 -18.75087 -18.74967 -17.81551 -17.26050 -17.01125 -16.70348 -15.93118 -15.76726 -15.43938 -15.04178 -14.98488 -14.79801 -14.55573 -14.27911 -13.63179 -13.50957 -13.40931 -12.96965 -12.84652 -12.72954 -12.60212 -12.53947 -12.30071 -11.91887 -11.80117 -11.40341 -11.35095 -11.22399 -10.49369 -9.77128 -9.12345 -8.98479 -7.54234 0.02662 0.38600 0.48665 1.03204 1.12090 1.19380 1.86952 2.32655 2.40173 2.49905 2.84476 3.25755 3.54109 3.69109 3.79021 3.93196 4.07634 4.23754 4.25750 4.33426 4.52188 4.54182 4.61840 4.70141 4.73502 5.02741 5.08083 5.15855 5.35055 5.37083 5.54417 5.63204 5.87249 6.00732 6.18223 6.46838 6.52079 8.18454 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.006180 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.423791 B = 4529.868239 C = 5229.102657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.112 3.888 3 Si 0.819 3.181 4 H -0.239 1.239 5 H -0.220 1.220 6 H -0.232 1.232 7 C -1.034 5.034 8 H 0.115 0.885 9 S 2.694 3.306 10 O -1.029 7.029 11 O -1.027 7.027 12 N -1.099 6.099 13 C 0.197 3.803 14 H 0.087 0.913 15 C -0.171 4.171 16 C 0.064 3.936 17 O -0.321 6.321 18 C 0.128 3.872 19 C -0.157 4.157 20 C -0.076 4.076 21 C -0.159 4.159 22 C -0.090 4.090 23 C -0.185 4.185 24 H 0.291 0.709 25 H 0.419 0.581 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.142 0.858 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.144 0.856 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.927 -12.480 -4.804 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.105 4.105 3 Si 0.637 3.363 4 H -0.163 1.163 5 H -0.142 1.142 6 H -0.154 1.154 7 C -1.167 5.167 8 H 0.133 0.867 9 S 2.794 3.206 10 O -1.020 7.020 11 O -1.016 7.016 12 N -0.856 5.856 13 C 0.090 3.910 14 H 0.105 0.895 15 C -0.211 4.211 16 C -0.011 4.011 17 O -0.235 6.235 18 C 0.082 3.918 19 C -0.175 4.175 20 C -0.093 4.093 21 C -0.177 4.177 22 C -0.109 4.109 23 C -0.187 4.187 24 H 0.102 0.898 25 H 0.254 0.746 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.160 0.840 29 H 0.090 0.910 30 H 0.170 0.830 31 H 0.182 0.818 32 H 0.161 0.839 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.195 -11.754 -4.944 16.326 hybrid contribution -0.802 0.897 0.569 1.331 sum 9.393 -10.857 -4.376 15.008 Atomic orbital electron populations 1.69992 1.07256 1.30443 1.40208 1.25081 0.95586 1.01179 0.88701 0.87568 0.82894 0.83292 0.82559 1.16263 1.14204 1.15445 1.30911 1.17425 1.01965 1.66369 0.86704 1.00650 0.76116 0.71434 0.72399 1.93441 1.85403 1.77259 1.45854 1.93390 1.84776 1.77282 1.46177 1.55107 1.73055 1.29705 1.27758 1.19480 0.92594 0.91764 0.87211 0.89530 1.22707 1.01166 0.96604 1.00582 1.23193 0.82588 0.97231 0.98128 1.85947 1.14320 1.34829 1.88414 1.18924 0.88660 0.88177 0.96005 1.20918 0.90734 1.02163 1.03721 1.21334 0.98619 0.92757 0.96618 1.21336 0.97719 0.96868 1.01816 1.21065 0.93016 0.99192 0.97602 1.20113 0.97051 0.94413 1.07170 0.89811 0.74625 0.89212 0.88986 0.83986 0.91007 0.83050 0.81813 0.83857 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.11 13.96 21.45 0.30 -47.81 16 2 C 0.11 6.32 5.47 84.66 0.46 6.78 16 3 Si 0.82 40.74 26.54 68.60 1.82 42.56 16 4 H -0.24 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.22 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.23 -11.93 5.61 99.48 0.56 -11.37 16 7 C -1.03 -56.54 10.25 67.73 0.69 -55.84 16 8 H 0.11 6.26 7.77 -2.91 -0.02 6.24 16 9 S 2.69 132.15 4.12 -56.49 -0.23 131.92 16 10 O -1.03 -54.72 16.02 -128.00 -2.05 -56.77 16 11 O -1.03 -53.69 16.34 -128.00 -2.09 -55.78 16 12 N -1.10 -41.58 4.60 -172.32 -0.79 -42.37 16 13 C 0.20 6.76 2.93 44.30 0.13 6.89 16 14 H 0.09 3.28 7.59 -2.39 -0.02 3.26 16 15 C -0.17 -4.82 5.80 30.76 0.18 -4.64 16 16 C 0.06 1.45 7.03 72.12 0.51 1.96 16 17 O -0.32 -8.24 10.27 -91.77 -0.94 -9.18 16 18 C 0.13 3.52 6.47 22.52 0.15 3.67 16 19 C -0.16 -3.48 9.94 22.42 0.22 -3.25 16 20 C -0.08 -1.49 10.04 22.22 0.22 -1.26 16 21 C -0.16 -3.83 10.04 22.25 0.22 -3.60 16 22 C -0.09 -2.81 9.27 22.30 0.21 -2.60 16 23 C -0.18 -5.81 5.56 -19.75 -0.11 -5.92 16 24 H 0.29 14.91 8.31 -92.71 -0.77 14.14 16 25 H 0.42 13.79 8.96 -96.74 -0.87 12.92 16 26 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.09 2.71 7.85 -2.39 -0.02 2.69 16 28 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 33 H 0.11 3.71 7.70 -2.91 -0.02 3.69 16 Total: -1.00 -69.04 291.24 -0.98 -70.03 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.12 Total: 25.22 kcal Atomic # 6 Polarization: -60.71 SS G_CDS: 2.88 Total: -57.82 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -0.49 Total: -90.18 kcal Atomic # 8 Polarization: -116.64 SS G_CDS: -5.09 Total: -121.72 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.82 Total: 42.56 kcal Atomic # 16 Polarization: 132.15 SS G_CDS: -0.23 Total: 131.92 kcal Total: -69.04 -0.98 -70.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051987860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.350 kcal (2) G-P(sol) polarization free energy of solvation -69.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds