Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48494 * 109.47411 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46960 * 300.00080 * 3 2 1 6 6 H 1.48501 * 109.47061 * 59.99485 * 3 2 1 7 7 C 1.38751 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00090 * 180.02562 * 7 2 1 9 9 O 1.34915 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.34312 * 117.00140 * 179.97438 * 9 7 2 11 11 O 1.21212 * 120.00013 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99975 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47123 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47057 * 180.02562 * 13 12 10 15 15 N 1.46506 * 109.47305 * 180.02562 * 14 13 12 16 16 C 1.34769 * 120.00065 * 180.02562 * 15 14 13 17 17 O 1.21634 * 120.00318 * 359.97438 * 16 15 14 18 18 C 1.47189 * 119.99779 * 179.97438 * 16 15 14 19 19 C 1.44425 * 123.46427 * 180.02562 * 18 16 15 20 20 C 1.32765 * 113.08873 * 180.02562 * 19 18 16 21 21 S 1.75505 * 110.57364 * 359.76541 * 20 19 18 22 22 C 1.36014 * 123.46281 * 0.02724 * 18 16 15 23 23 H 0.96993 * 120.00417 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47359 * 60.00322 * 12 10 9 25 25 H 1.08997 * 109.47489 * 300.00388 * 12 10 9 26 26 H 1.09004 * 109.47085 * 60.00530 * 13 12 10 27 27 H 1.08994 * 109.47284 * 299.99939 * 13 12 10 28 28 H 1.08999 * 109.47434 * 60.00035 * 14 13 12 29 29 H 1.08997 * 109.47481 * 300.00060 * 14 13 12 30 30 H 0.97004 * 119.99282 * 359.97438 * 15 14 13 31 31 H 1.07999 * 123.45444 * 0.02562 * 19 18 16 32 32 H 1.08000 * 124.71628 * 179.97438 * 20 19 18 33 33 H 1.08002 * 124.58647 * 359.94919 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2124 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2015 0.0010 9 8 1.3338 -2.3700 0.0005 10 6 2.0653 -3.4964 0.0005 11 8 3.2758 -3.4329 0.0010 12 6 1.3813 -4.8392 0.0000 13 6 2.4351 -5.9484 0.0007 14 6 1.7405 -7.3117 -0.0005 15 7 2.7496 -8.3739 0.0008 16 6 2.3675 -9.6663 -0.0004 17 8 1.1849 -9.9509 -0.0023 18 6 3.3813 -10.7334 0.0004 19 6 3.0563 -12.1406 -0.0015 20 6 4.1291 -12.9227 0.0002 21 16 5.5954 -11.9583 -0.0026 22 6 4.7205 -10.4956 0.0029 23 1 -0.4850 0.8399 -0.0004 24 1 0.7589 -4.9295 -0.8903 25 1 0.7581 -4.9299 0.8896 26 1 3.0571 -5.8580 0.8913 27 1 3.0585 -5.8579 -0.8887 28 1 1.1187 -7.4019 -0.8912 29 1 1.1168 -7.4025 0.8887 30 1 3.6927 -8.1468 0.0019 31 1 2.0444 -12.5180 -0.0039 32 1 4.1032 -14.0024 -0.0003 33 1 5.1686 -9.5129 0.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060770560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -96.287963 kcal Electronic energy + Delta-G solvation = -18403.307291 eV Core-core repulsion = 15134.832742 eV Total energy + Delta-G solvation = -3268.474549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04259 -39.01349 -37.16577 -35.93864 -35.00881 -32.63974 -32.12554 -30.19425 -27.36064 -25.44364 -24.72945 -22.29493 -21.48330 -19.91765 -19.19991 -18.42422 -17.72762 -17.21849 -16.60683 -15.96736 -15.66225 -15.04269 -14.84242 -14.37726 -14.27075 -14.02501 -13.44848 -13.39617 -13.09112 -12.79966 -12.41646 -12.23838 -12.08583 -11.59649 -11.46767 -11.23051 -11.20302 -10.73352 -10.41092 -10.37999 -10.08694 -9.80083 -9.44858 -9.21609 -9.04240 -8.77629 -8.58672 -6.41345 -4.09437 0.41509 1.16953 1.54433 1.71177 2.99274 3.09375 3.18078 3.18868 3.26246 3.53204 3.94730 4.37966 4.50758 4.69131 4.88480 5.00961 5.07404 5.16465 5.22186 5.27467 5.44912 5.69226 5.71698 5.73880 5.89529 5.94515 6.22846 6.27453 6.40727 6.79667 7.33415 7.39602 7.95267 8.05310 8.71092 9.07590 9.85674 10.76815 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.045790 B = 0.002374 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.342506 B =11791.332147 C =12376.926409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.382 4.382 8 H 0.096 0.904 9 O -0.216 6.216 10 C 0.397 3.603 11 O -0.560 6.560 12 C -0.100 4.100 13 C -0.115 4.115 14 C 0.119 3.881 15 N -0.722 5.722 16 C 0.575 3.425 17 O -0.537 6.537 18 C -0.153 4.153 19 C -0.085 4.085 20 C -0.238 4.238 21 S 0.184 5.816 22 C -0.212 4.212 23 H 0.269 0.731 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.400 0.600 31 H 0.155 0.845 32 H 0.170 0.830 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.831 -23.223 -0.006 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.113 0.887 9 O -0.123 6.123 10 C 0.244 3.756 11 O -0.458 6.458 12 C -0.139 4.139 13 C -0.153 4.153 14 C -0.005 4.005 15 N -0.374 5.374 16 C 0.360 3.640 17 O -0.415 6.415 18 C -0.171 4.171 19 C -0.114 4.114 20 C -0.372 4.372 21 S 0.450 5.550 22 C -0.350 4.350 23 H 0.079 0.921 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.235 0.765 31 H 0.172 0.828 32 H 0.187 0.813 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.619 -23.581 -0.011 25.467 hybrid contribution -0.674 1.402 0.004 1.556 sum 8.945 -22.178 -0.007 23.914 Atomic orbital electron populations 1.69997 1.05999 1.27580 1.46664 1.25344 0.95815 0.98897 0.96254 0.85621 0.79422 0.80119 0.78123 1.18996 1.20173 1.20178 1.21260 0.92354 0.79910 1.52330 0.88686 1.83878 1.39437 1.13459 1.75477 1.23134 0.86669 0.87341 0.78479 1.90543 1.15815 1.88221 1.51243 1.20938 0.98392 0.89605 1.04941 1.21526 0.98245 0.91299 1.04271 1.21462 0.90701 0.85378 1.02917 1.45878 1.10752 1.05503 1.75220 1.17587 0.87855 0.82084 0.76463 1.90801 1.17725 1.83108 1.49894 1.20372 0.92384 0.94538 1.09838 1.21162 1.00414 0.90283 0.99540 1.25535 0.95630 1.04079 1.12001 1.83107 1.08784 0.93919 1.69220 1.25736 0.97706 1.05009 1.06576 0.92122 0.88753 0.88759 0.90510 0.90518 0.90930 0.90936 0.76523 0.82782 0.81266 0.81105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.47 13.67 55.48 0.76 -24.71 16 2 C 0.04 1.15 5.49 -17.53 -0.10 1.06 16 3 Si 0.94 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.38 -11.32 9.64 30.92 0.30 -11.02 16 8 H 0.10 2.83 6.86 -52.48 -0.36 2.47 16 9 O -0.22 -6.15 9.75 -20.69 -0.20 -6.35 16 10 C 0.40 9.52 7.91 36.00 0.28 9.80 16 11 O -0.56 -14.56 15.22 -19.05 -0.29 -14.85 16 12 C -0.10 -1.69 5.81 -27.88 -0.16 -1.85 16 13 C -0.12 -1.59 4.62 -26.73 -0.12 -1.72 16 14 C 0.12 1.45 5.67 -4.04 -0.02 1.42 16 15 N -0.72 -8.03 5.52 -61.46 -0.34 -8.37 16 16 C 0.57 7.36 7.79 -12.63 -0.10 7.26 16 17 O -0.54 -8.78 16.80 5.25 0.09 -8.70 16 18 C -0.15 -1.57 5.98 -104.63 -0.63 -2.20 16 19 C -0.08 -0.79 10.10 -39.02 -0.39 -1.18 16 20 C -0.24 -1.64 11.12 28.86 0.32 -1.32 16 21 S 0.18 1.15 23.02 -107.50 -2.48 -1.32 16 22 C -0.21 -1.65 10.38 29.93 0.31 -1.34 16 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 25 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 27 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.40 3.47 6.97 -40.82 -0.28 3.19 16 31 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.17 0.97 7.01 -52.49 -0.37 0.60 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -35.79 313.40 -6.59 -42.39 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.52 Total: 1.99 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.31 Total: -1.08 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.42 Total: -33.08 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.40 Total: -29.90 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.48 Total: -1.32 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.79 -6.59 -42.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060770560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.900 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds