Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48494 * 109.47411 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46960 * 300.00080 * 3 2 1 6 6 H 1.48501 * 109.47061 * 59.99485 * 3 2 1 7 7 C 1.38751 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00090 * 180.02562 * 7 2 1 9 9 O 1.34915 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.34312 * 117.00140 * 179.97438 * 9 7 2 11 11 O 1.21212 * 120.00013 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99975 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47123 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47057 * 180.02562 * 13 12 10 15 15 N 1.46506 * 109.47305 * 180.02562 * 14 13 12 16 16 C 1.34769 * 120.00065 * 180.02562 * 15 14 13 17 17 O 1.21634 * 120.00318 * 359.97438 * 16 15 14 18 18 C 1.47189 * 119.99779 * 179.97438 * 16 15 14 19 19 C 1.44425 * 123.46427 * 180.02562 * 18 16 15 20 20 C 1.32765 * 113.08873 * 180.02562 * 19 18 16 21 21 S 1.75505 * 110.57364 * 359.76541 * 20 19 18 22 22 C 1.36014 * 123.46281 * 0.02724 * 18 16 15 23 23 H 0.96993 * 120.00417 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47359 * 60.00322 * 12 10 9 25 25 H 1.08997 * 109.47489 * 300.00388 * 12 10 9 26 26 H 1.09004 * 109.47085 * 60.00530 * 13 12 10 27 27 H 1.08994 * 109.47284 * 299.99939 * 13 12 10 28 28 H 1.08999 * 109.47434 * 60.00035 * 14 13 12 29 29 H 1.08997 * 109.47481 * 300.00060 * 14 13 12 30 30 H 0.97004 * 119.99282 * 359.97438 * 15 14 13 31 31 H 1.07999 * 123.45444 * 0.02562 * 19 18 16 32 32 H 1.08000 * 124.71628 * 179.97438 * 20 19 18 33 33 H 1.08002 * 124.58647 * 359.94919 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2124 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2015 0.0010 9 8 1.3338 -2.3700 0.0005 10 6 2.0653 -3.4964 0.0005 11 8 3.2758 -3.4329 0.0010 12 6 1.3813 -4.8392 0.0000 13 6 2.4351 -5.9484 0.0007 14 6 1.7405 -7.3117 -0.0005 15 7 2.7496 -8.3739 0.0008 16 6 2.3675 -9.6663 -0.0004 17 8 1.1849 -9.9509 -0.0023 18 6 3.3813 -10.7334 0.0004 19 6 3.0563 -12.1406 -0.0015 20 6 4.1291 -12.9227 0.0002 21 16 5.5954 -11.9583 -0.0026 22 6 4.7205 -10.4956 0.0029 23 1 -0.4850 0.8399 -0.0004 24 1 0.7589 -4.9295 -0.8903 25 1 0.7581 -4.9299 0.8896 26 1 3.0571 -5.8580 0.8913 27 1 3.0585 -5.8579 -0.8887 28 1 1.1187 -7.4019 -0.8912 29 1 1.1168 -7.4025 0.8887 30 1 3.6927 -8.1468 0.0019 31 1 2.0444 -12.5180 -0.0039 32 1 4.1032 -14.0024 -0.0003 33 1 5.1686 -9.5129 0.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060770560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -120.895316 kcal Electronic energy + Delta-G solvation = -18404.374346 eV Core-core repulsion = 15134.832742 eV Total energy + Delta-G solvation = -3269.541604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10619 -40.86199 -37.93818 -37.51483 -36.52911 -34.31353 -33.83696 -30.93607 -28.72087 -27.14397 -25.75737 -23.52269 -22.35559 -21.51937 -20.11675 -19.87224 -19.10015 -18.42680 -17.99889 -17.28386 -16.91993 -16.44376 -16.29959 -16.12369 -15.45567 -15.36330 -14.44672 -14.16945 -13.96716 -13.93363 -13.68040 -13.49137 -13.43346 -13.15836 -12.98160 -12.51745 -12.35535 -12.16577 -12.08844 -11.95529 -11.92512 -11.10074 -10.99570 -10.70093 -10.25075 -9.98949 -9.35507 -8.54082 -6.33988 -0.22371 0.62642 0.96165 0.99283 1.30506 1.34422 1.52959 1.66026 2.00751 2.19105 2.30967 2.84080 2.97413 3.78090 3.87999 3.97574 4.00820 4.07285 4.31465 4.45466 4.51612 4.52396 4.72735 4.83283 4.86982 5.07474 5.13211 5.17752 5.20524 5.25868 5.36576 5.83795 6.45927 6.68609 6.91583 7.13371 7.78195 8.67043 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.045790 B = 0.002374 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.342506 B =11791.332147 C =12376.926409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.007 4.007 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.420 4.420 8 H 0.082 0.918 9 O -0.249 6.249 10 C 0.395 3.605 11 O -0.583 6.583 12 C -0.093 4.093 13 C -0.100 4.100 14 C 0.127 3.873 15 N -0.714 5.714 16 C 0.572 3.428 17 O -0.583 6.583 18 C -0.185 4.185 19 C -0.112 4.112 20 C -0.233 4.233 21 S 0.242 5.758 22 C -0.210 4.210 23 H 0.278 0.722 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.413 0.587 31 H 0.144 0.856 32 H 0.195 0.805 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.553 -23.802 -0.006 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.207 4.207 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.100 0.900 9 O -0.157 6.157 10 C 0.243 3.757 11 O -0.481 6.481 12 C -0.131 4.131 13 C -0.138 4.138 14 C 0.004 3.996 15 N -0.366 5.366 16 C 0.360 3.640 17 O -0.465 6.465 18 C -0.203 4.203 19 C -0.141 4.141 20 C -0.368 4.368 21 S 0.508 5.492 22 C -0.349 4.349 23 H 0.088 0.912 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.250 0.750 31 H 0.162 0.838 32 H 0.212 0.788 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 11.371 -24.181 -0.011 26.721 hybrid contribution -1.100 1.432 0.005 1.806 sum 10.271 -22.749 -0.007 24.960 Atomic orbital electron populations 1.70079 1.07670 1.29289 1.47173 1.26555 0.96888 1.02460 0.94799 0.84563 0.77794 0.74780 0.79190 1.18788 1.18507 1.18518 1.21442 0.92119 0.81280 1.54729 0.90024 1.83905 1.40552 1.14399 1.76890 1.24509 0.86747 0.88441 0.75966 1.90512 1.17147 1.88746 1.51696 1.21104 0.99143 0.86051 1.06794 1.21373 0.97314 0.90986 1.04145 1.21266 0.90725 0.84671 1.02948 1.45762 1.11275 1.04926 1.74588 1.18002 0.87824 0.82769 0.75433 1.90766 1.19650 1.83781 1.52278 1.20252 0.92754 0.94219 1.13089 1.21184 1.00873 0.90400 1.01599 1.25877 0.95480 1.05403 1.10012 1.82978 1.07111 0.92067 1.67089 1.26062 0.97113 1.07064 1.04655 0.91240 0.86797 0.86803 0.90662 0.90671 0.90976 0.90984 0.75034 0.83801 0.78797 0.79224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.71 13.67 21.62 0.30 -53.41 16 2 C -0.01 -0.40 5.49 84.87 0.47 0.06 16 3 Si 1.02 43.41 29.55 68.60 2.03 45.44 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.42 -25.45 9.64 67.94 0.66 -24.80 16 8 H 0.08 5.01 6.86 -2.91 -0.02 4.99 16 9 O -0.25 -14.56 9.75 14.92 0.15 -14.41 16 10 C 0.40 19.12 7.91 71.24 0.56 19.68 16 11 O -0.58 -30.62 15.22 20.77 0.32 -30.30 16 12 C -0.09 -3.04 5.81 29.85 0.17 -2.87 16 13 C -0.10 -2.64 4.62 30.59 0.14 -2.50 16 14 C 0.13 2.98 5.67 86.38 0.49 3.47 16 15 N -0.71 -15.25 5.52 -466.60 -2.58 -17.83 16 16 C 0.57 14.67 7.79 86.60 0.67 15.34 16 17 O -0.58 -19.61 16.80 -4.14 -0.07 -19.68 16 18 C -0.18 -3.69 5.98 -19.87 -0.12 -3.81 16 19 C -0.11 -2.03 10.10 22.67 0.23 -1.80 16 20 C -0.23 -2.76 11.12 66.64 0.74 -2.01 16 21 S 0.24 2.33 23.02 -56.49 -1.30 1.03 16 22 C -0.21 -2.85 10.38 67.30 0.70 -2.15 16 23 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 24 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 25 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 26 H 0.07 2.03 8.10 -2.38 -0.02 2.01 16 27 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.41 6.54 6.97 -92.71 -0.65 5.90 16 31 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.19 1.66 7.01 -2.91 -0.02 1.64 16 Total: -1.00 -79.65 313.40 4.05 -75.60 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.50 Total: 14.96 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 4.71 Total: -1.38 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -2.28 Total: -71.25 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: 0.39 Total: -64.40 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.30 Total: 1.03 kcal Total: -79.65 4.05 -75.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060770560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.297 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds