Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48497 * 109.46905 * 239.99918 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47008 * 119.99979 * 3 2 1 7 7 C 1.37870 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00263 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47459 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.34732 * 116.99922 * 180.02562 * 11 10 9 13 13 O 1.21494 * 119.99843 * 0.27073 * 12 11 10 14 14 C 1.47566 * 120.00189 * 180.02562 * 12 11 10 15 15 C 1.39708 * 120.17061 * 359.72194 * 14 12 11 16 16 C 1.37845 * 119.87300 * 179.76202 * 15 14 12 17 17 N 1.48018 * 119.88669 * 180.23008 * 16 15 14 18 18 O 1.21798 * 119.99509 * 180.25870 * 17 16 15 19 19 O 1.21798 * 120.00122 * 0.26155 * 17 16 15 20 20 C 1.38472 * 120.21914 * 0.49468 * 16 15 14 21 21 C 1.38201 * 120.35435 * 359.75741 * 20 16 15 22 22 C 1.38311 * 120.12273 * 0.02562 * 21 20 16 23 23 F 1.35101 * 120.11280 * 179.97438 * 22 21 20 24 24 H 0.96996 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47425 * 59.99753 * 9 7 2 26 26 H 1.08998 * 109.47036 * 299.99805 * 9 7 2 27 27 H 1.09003 * 109.46945 * 60.00332 * 10 9 7 28 28 H 1.08998 * 109.47020 * 300.00038 * 10 9 7 29 29 H 1.08004 * 120.06468 * 359.97438 * 15 14 12 30 30 H 1.08005 * 119.81861 * 179.73812 * 20 16 15 31 31 H 1.08005 * 119.93652 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5192 -4.9195 0.0011 12 6 2.2530 -6.0495 0.0018 13 8 3.4662 -5.9859 0.0068 14 6 1.5830 -7.3643 0.0018 15 6 0.1881 -7.4416 0.0071 16 6 -0.4314 -8.6730 0.0022 17 7 -1.9093 -8.7552 0.0027 18 8 -2.4586 -9.8422 0.0031 19 8 -2.5759 -7.7358 0.0026 20 6 0.3244 -9.8333 0.0024 21 6 1.7048 -9.7677 0.0024 22 6 2.3413 -8.5397 0.0028 23 9 3.6908 -8.4758 0.0034 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 -0.4038 -6.5382 0.0116 30 1 -0.1677 -10.7947 0.0028 31 1 2.2876 -10.6770 0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061389063.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = -111.177976 kcal Electronic energy + Delta-G solvation = -21021.623886 eV Core-core repulsion = 17186.290482 eV Total energy + Delta-G solvation = -3835.333405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.65005 -42.44908 -40.51422 -39.18374 -36.80433 -36.37857 -33.47501 -32.51541 -32.15445 -30.30744 -26.72562 -25.81389 -24.60928 -23.16459 -21.65556 -20.91630 -19.48821 -19.00725 -18.33921 -17.79240 -17.63448 -16.92328 -16.60546 -16.39140 -15.90508 -15.88624 -15.00817 -14.56123 -14.27360 -14.01249 -13.66460 -13.10854 -13.06642 -12.42194 -12.37588 -11.78315 -11.50741 -11.39742 -11.34478 -11.18010 -10.85837 -10.84083 -10.56220 -10.15797 -9.93491 -9.79145 -9.75670 -9.39770 -8.49587 -6.15409 -4.20862 -0.68375 -0.09272 0.80336 1.01365 2.07646 2.57206 2.86841 3.22707 3.26933 3.31554 3.34072 3.65669 3.86736 4.02625 4.30931 4.39863 4.63958 4.92150 4.97026 5.05952 5.21160 5.26320 5.58932 5.87712 5.93551 6.05719 6.48410 6.63600 7.36280 7.43651 7.52272 7.72120 7.88410 8.15360 8.84066 9.44074 10.95847 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.003762 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.774457 B = 7441.007727 C = 8822.333738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.347 6.347 12 C 0.501 3.499 13 O -0.491 6.491 14 C -0.153 4.153 15 C 0.032 3.968 16 C -0.072 4.072 17 N 0.029 4.971 18 O -0.158 6.158 19 O -0.142 6.142 20 C 0.001 3.999 21 C -0.165 4.165 22 C 0.214 3.786 23 F -0.094 7.094 24 H 0.265 0.735 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.183 0.817 30 H 0.170 0.830 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 -21.628 0.004 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.263 6.263 12 C 0.344 3.656 13 O -0.380 6.380 14 C -0.156 4.156 15 C 0.013 3.987 16 C -0.155 4.155 17 N 0.551 4.449 18 O -0.374 6.374 19 O -0.361 6.361 20 C -0.018 4.018 21 C -0.184 4.184 22 C 0.193 3.807 23 F -0.071 7.071 24 H 0.075 0.925 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.200 0.800 30 H 0.187 0.813 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.175 -21.388 0.008 21.499 hybrid contribution 0.456 0.964 -0.001 1.066 sum 2.631 -20.425 0.007 20.593 Atomic orbital electron populations 1.69959 1.06079 1.27257 1.49281 1.24973 0.94925 0.99393 0.94717 0.86519 0.79487 0.82422 0.78796 1.20045 1.21050 1.20049 1.20899 0.93139 0.89983 1.52842 0.92262 1.19199 0.94150 0.88775 0.99129 1.23831 0.96590 0.77731 1.01412 1.86574 1.41869 1.15526 1.82326 1.20383 0.85653 0.85047 0.74504 1.90907 1.14221 1.88004 1.44909 1.19316 0.92770 0.91900 1.11643 1.21357 0.93234 0.98248 0.85832 1.21023 0.80748 0.96339 1.17408 1.43413 1.02932 1.00747 0.97836 1.94537 1.73263 1.16016 1.53535 1.94640 1.63521 1.25280 1.52611 1.21090 0.92835 0.98536 0.89328 1.21129 0.93961 0.97379 1.05963 1.18022 0.78089 0.92836 0.91713 1.91696 1.26991 1.97007 1.91412 0.92529 0.95150 0.95142 0.91825 0.91818 0.79998 0.81301 0.81283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 10 C 0.08 1.60 5.41 37.16 0.20 1.81 16 11 O -0.35 -6.40 9.47 -40.58 -0.38 -6.79 16 12 C 0.50 8.22 7.89 34.54 0.27 8.49 16 13 O -0.49 -9.18 15.13 -19.26 -0.29 -9.48 16 14 C -0.15 -1.86 5.88 -104.93 -0.62 -2.48 16 15 C 0.03 0.36 9.12 -39.18 -0.36 0.00 16 16 C -0.07 -0.71 6.84 -80.00 -0.55 -1.25 16 17 N 0.03 0.35 4.45 33.93 0.15 0.50 16 18 O -0.16 -1.89 18.44 -29.46 -0.54 -2.43 16 19 O -0.14 -1.97 18.43 -29.46 -0.54 -2.51 16 20 C 0.00 0.01 9.55 -39.51 -0.38 -0.37 16 21 C -0.17 -1.01 10.01 -39.57 -0.40 -1.41 16 22 C 0.21 2.12 7.29 -38.94 -0.28 1.84 16 23 F -0.09 -1.10 15.55 2.25 0.04 -1.07 16 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.18 2.12 7.15 -52.48 -0.38 1.74 16 30 H 0.17 0.68 7.60 -52.48 -0.40 0.29 16 31 H 0.17 0.47 8.06 -52.48 -0.42 0.05 16 LS Contribution 298.96 15.07 4.51 4.51 Total: -1.00 -31.30 298.96 -6.45 -37.75 By element: Atomic # 1 Polarization: -2.86 SS G_CDS: -2.43 Total: -5.29 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.67 Total: -6.12 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.89 Total: -24.61 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.76 Total: -21.20 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.30 -6.45 -37.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061389063.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.429 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds