Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48497 * 109.46905 * 239.99918 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47008 * 119.99979 * 3 2 1 7 7 C 1.37870 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00263 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47459 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.34732 * 116.99922 * 180.02562 * 11 10 9 13 13 O 1.21494 * 119.99843 * 0.27073 * 12 11 10 14 14 C 1.47566 * 120.00189 * 180.02562 * 12 11 10 15 15 C 1.39708 * 120.17061 * 359.72194 * 14 12 11 16 16 C 1.37845 * 119.87300 * 179.76202 * 15 14 12 17 17 N 1.48018 * 119.88669 * 180.23008 * 16 15 14 18 18 O 1.21798 * 119.99509 * 180.25870 * 17 16 15 19 19 O 1.21798 * 120.00122 * 0.26155 * 17 16 15 20 20 C 1.38472 * 120.21914 * 0.49468 * 16 15 14 21 21 C 1.38201 * 120.35435 * 359.75741 * 20 16 15 22 22 C 1.38311 * 120.12273 * 0.02562 * 21 20 16 23 23 F 1.35101 * 120.11280 * 179.97438 * 22 21 20 24 24 H 0.96996 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47425 * 59.99753 * 9 7 2 26 26 H 1.08998 * 109.47036 * 299.99805 * 9 7 2 27 27 H 1.09003 * 109.46945 * 60.00332 * 10 9 7 28 28 H 1.08998 * 109.47020 * 300.00038 * 10 9 7 29 29 H 1.08004 * 120.06468 * 359.97438 * 15 14 12 30 30 H 1.08005 * 119.81861 * 179.73812 * 20 16 15 31 31 H 1.08005 * 119.93652 * 179.97438 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5192 -4.9195 0.0011 12 6 2.2530 -6.0495 0.0018 13 8 3.4662 -5.9859 0.0068 14 6 1.5830 -7.3643 0.0018 15 6 0.1881 -7.4416 0.0071 16 6 -0.4314 -8.6730 0.0022 17 7 -1.9093 -8.7552 0.0027 18 8 -2.4586 -9.8422 0.0031 19 8 -2.5759 -7.7358 0.0026 20 6 0.3244 -9.8333 0.0024 21 6 1.7048 -9.7677 0.0024 22 6 2.3413 -8.5397 0.0028 23 9 3.6908 -8.4758 0.0034 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 -0.4038 -6.5382 0.0116 30 1 -0.1677 -10.7947 0.0028 31 1 2.2876 -10.6770 0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061389063.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = -128.605987 kcal Electronic energy + Delta-G solvation = -21022.379621 eV Core-core repulsion = 17186.290482 eV Total energy + Delta-G solvation = -3836.089140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.49445 -43.35898 -41.77835 -40.14739 -37.88202 -37.74809 -35.50550 -33.48426 -32.93999 -32.20323 -27.61874 -27.44886 -25.90474 -24.10778 -23.09098 -22.46000 -20.53124 -19.91105 -19.17354 -19.00718 -18.70154 -18.25639 -17.85772 -17.83780 -17.23547 -17.01061 -16.53295 -15.73350 -15.23031 -14.94977 -14.78929 -14.58894 -14.39314 -14.03633 -13.24523 -13.23509 -13.11603 -12.74234 -12.65122 -12.63811 -12.43043 -12.33255 -12.06634 -11.64934 -11.60341 -11.46968 -10.90661 -10.70153 -10.62889 -8.28846 -6.42831 -1.51954 -0.94706 -0.04324 0.16103 1.03111 1.29307 1.42247 1.43720 1.52689 1.90706 2.37500 2.43744 2.87608 3.05790 3.08881 3.28202 3.47384 3.72941 4.12139 4.14911 4.22635 4.25264 4.37764 4.48808 4.62100 4.90426 5.08052 5.17140 5.38649 5.41490 5.68656 6.02171 6.37241 6.37795 6.70559 7.27350 8.83424 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.003762 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.774457 B = 7441.007727 C = 8822.333738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.067 0.933 9 C 0.030 3.970 10 C 0.092 3.908 11 O -0.356 6.356 12 C 0.501 3.499 13 O -0.518 6.518 14 C -0.173 4.173 15 C 0.029 3.971 16 C -0.077 4.077 17 N 0.031 4.969 18 O -0.120 6.120 19 O -0.213 6.213 20 C 0.030 3.970 21 C -0.130 4.130 22 C 0.212 3.788 23 F -0.105 7.105 24 H 0.268 0.732 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.163 0.837 30 H 0.211 0.789 31 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -24.376 0.002 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.085 0.915 9 C -0.007 4.007 10 C 0.019 3.981 11 O -0.272 6.272 12 C 0.346 3.654 13 O -0.408 6.408 14 C -0.176 4.176 15 C 0.009 3.991 16 C -0.160 4.160 17 N 0.549 4.451 18 O -0.349 6.349 19 O -0.415 6.415 20 C 0.011 3.989 21 C -0.149 4.149 22 C 0.192 3.808 23 F -0.083 7.083 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.181 0.819 30 H 0.228 0.772 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.352 -24.005 0.005 24.237 hybrid contribution 0.069 1.529 0.000 1.530 sum 3.421 -22.476 0.006 22.735 Atomic orbital electron populations 1.70091 1.07839 1.28411 1.50124 1.25957 0.95811 1.03410 0.93987 0.85378 0.78186 0.77429 0.79333 1.19010 1.20532 1.19024 1.21329 0.93762 0.91104 1.52863 0.91509 1.18999 0.94358 0.90488 0.96888 1.23313 0.95147 0.78024 1.01597 1.86552 1.42039 1.15654 1.82962 1.21047 0.85544 0.85589 0.73214 1.90881 1.15244 1.88331 1.46393 1.19005 0.93090 0.90349 1.15110 1.21101 0.92745 0.98676 0.86540 1.21097 0.79381 0.97029 1.18502 1.43666 1.03803 1.00385 0.97254 1.94487 1.73914 1.15707 1.50757 1.94677 1.64502 1.25746 1.56548 1.21624 0.92719 0.98625 0.85901 1.21603 0.93661 0.97123 1.02505 1.18315 0.77517 0.93299 0.91683 1.91674 1.27948 1.97096 1.91535 0.92293 0.97389 0.97385 0.91586 0.91566 0.81908 0.77247 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 2 C 0.01 0.43 5.46 84.65 0.46 0.90 16 3 Si 0.97 43.35 29.54 68.60 2.03 45.37 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.59 5.35 29.85 0.16 1.75 16 10 C 0.09 4.03 5.41 71.98 0.39 4.42 16 11 O -0.36 -13.89 9.47 -56.42 -0.53 -14.42 16 12 C 0.50 16.96 7.89 70.28 0.55 17.51 16 13 O -0.52 -19.75 15.13 19.86 0.30 -19.44 16 14 C -0.17 -4.15 5.88 -20.06 -0.12 -4.27 16 15 C 0.03 0.64 9.12 22.53 0.21 0.85 16 16 C -0.08 -1.35 6.84 36.34 0.25 -1.10 16 17 N 0.03 0.71 4.45 -46.55 -0.21 0.50 16 18 O -0.12 -2.51 18.44 18.89 0.35 -2.17 16 19 O -0.21 -6.23 18.43 18.89 0.35 -5.88 16 20 C 0.03 0.24 9.55 22.32 0.21 0.45 16 21 C -0.13 -0.91 10.01 22.28 0.22 -0.69 16 22 C 0.21 3.68 7.29 22.68 0.17 3.85 16 23 F -0.10 -2.27 15.55 44.97 0.70 -1.57 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 2.84 8.13 -2.39 -0.02 2.82 16 28 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.16 4.23 7.15 -2.91 -0.02 4.21 16 30 H 0.21 0.17 7.60 -2.91 -0.02 0.15 16 31 H 0.22 -0.45 8.06 -2.91 -0.02 -0.48 16 Total: -1.00 -71.63 298.96 7.19 -64.44 By element: Atomic # 1 Polarization: -5.75 SS G_CDS: 1.18 Total: -4.57 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 2.74 Total: -7.16 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.08 Total: -54.60 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: 0.46 Total: -41.91 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.70 Total: -1.57 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.63 7.19 -64.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061389063.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.164 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds