Wall clock time and date at job start Tue Mar 31 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00182 * 2 1 4 4 H 1.48498 * 109.47360 * 270.00169 * 3 2 1 5 5 H 1.48501 * 109.47022 * 30.00082 * 3 2 1 6 6 H 1.48503 * 109.47205 * 150.00031 * 3 2 1 7 7 C 1.37884 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00314 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99528 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40289 * 66.46245 * 9 7 2 11 11 O 1.42094 * 106.40254 * 293.54164 * 9 7 2 12 12 N 1.65602 * 107.21870 * 179.97438 * 9 7 2 13 13 C 1.46379 * 119.76732 * 89.99924 * 12 9 7 14 14 C 1.52176 * 111.20635 * 116.25792 * 13 12 9 15 15 O 1.43254 * 110.14231 * 61.17030 * 14 13 12 16 16 C 1.35558 * 115.79475 * 270.79054 * 15 14 13 17 17 C 1.38865 * 120.19961 * 252.54422 * 16 15 14 18 18 C 1.38107 * 119.88419 * 177.19528 * 17 16 15 19 19 C 1.38299 * 120.35079 * 359.29175 * 18 17 16 20 20 C 1.38444 * 119.95371 * 0.81897 * 19 18 17 21 21 C 1.37659 * 119.67883 * 0.34482 * 20 19 18 22 22 C 1.46643 * 119.77564 * 270.02462 * 12 9 7 23 23 H 0.96992 * 119.99687 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.13474 * 355.81192 * 13 12 9 25 25 H 1.09003 * 109.08315 * 236.67060 * 13 12 9 26 26 H 1.08998 * 109.36166 * 300.96260 * 14 13 12 27 27 H 1.08994 * 109.24966 * 181.30053 * 14 13 12 28 28 H 1.07996 * 120.05674 * 356.91267 * 17 16 15 29 29 H 1.08003 * 119.82982 * 179.27236 * 18 17 16 30 30 H 1.07992 * 120.02250 * 180.84318 * 19 18 17 31 31 H 1.08001 * 120.16360 * 180.36956 * 20 19 18 32 32 H 1.08998 * 109.58690 * 20.19895 * 22 12 9 33 33 H 1.08991 * 109.58772 * 140.48514 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4519 -2.7955 1.2494 12 7 2.2483 -3.9355 -0.0019 13 6 2.7429 -4.4695 1.2681 14 6 2.3648 -5.9341 1.4339 15 8 2.9498 -6.7163 0.3860 16 6 2.2051 -6.8462 -0.7392 17 6 1.5930 -8.0568 -1.0359 18 6 0.7886 -8.1655 -2.1533 19 6 0.5772 -7.0707 -2.9714 20 6 1.1873 -5.8624 -2.6806 21 6 2.0081 -5.7607 -1.5802 22 6 2.7423 -4.4691 -1.2754 23 1 -0.4849 0.8400 0.0004 24 1 2.3137 -3.8946 2.0887 25 1 3.8285 -4.3754 1.2956 26 1 1.2800 -6.0338 1.3967 27 1 2.7276 -6.2920 2.3974 28 1 1.7494 -8.9130 -0.3966 29 1 0.3225 -9.1106 -2.3898 30 1 -0.0636 -7.1581 -3.8362 31 1 1.0199 -5.0037 -3.3138 32 1 2.5573 -3.7469 -2.0705 33 1 3.8121 -4.6632 -1.1998 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063013084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:02 Heat of formation + Delta-G solvation = -94.817373 kcal Electronic energy + Delta-G solvation = -20877.582309 eV Core-core repulsion = 17609.171530 eV Total energy + Delta-G solvation = -3268.410780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.15368 -37.27939 -35.43439 -35.32818 -33.99475 -33.10040 -31.69740 -30.32999 -28.07005 -26.16475 -25.62657 -22.82930 -21.55410 -21.06013 -18.84897 -18.02957 -17.12745 -16.48128 -15.79188 -15.60483 -15.17486 -14.91752 -14.80996 -14.43781 -13.91238 -13.53245 -13.39572 -13.18836 -12.50193 -12.06757 -11.93328 -11.83038 -11.59839 -11.45585 -11.24650 -11.14989 -10.87944 -10.63016 -10.33722 -10.27201 -10.18425 -9.78773 -9.28386 -8.98329 -8.68057 -8.38026 -8.26506 -6.73526 -5.36491 1.35229 1.53501 2.22410 3.04293 3.11196 3.17629 3.58354 4.02074 4.19154 4.54748 4.60247 4.98229 5.06630 5.18190 5.32018 5.38451 5.47208 5.51872 5.57219 5.69638 5.83634 5.84143 5.99147 6.07103 6.17337 6.19127 6.36903 6.50828 6.60719 6.66466 6.87444 6.94188 7.28608 7.49010 7.71148 7.93524 8.85070 10.20037 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.006058 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.278642 B = 4620.608671 C = 5017.765759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.021 5.021 8 H 0.103 0.897 9 S 2.710 3.290 10 O -0.998 6.998 11 O -1.004 7.004 12 N -1.007 6.007 13 C 0.093 3.907 14 C 0.051 3.949 15 O -0.329 6.329 16 C 0.106 3.894 17 C -0.143 4.143 18 C -0.111 4.111 19 C -0.133 4.133 20 C -0.081 4.081 21 C -0.129 4.129 22 C 0.170 3.830 23 H 0.291 0.709 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 -11.391 -1.768 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.154 5.154 8 H 0.121 0.879 9 S 2.811 3.189 10 O -0.988 6.988 11 O -0.994 6.994 12 N -0.840 5.840 13 C -0.033 4.033 14 C -0.025 4.025 15 O -0.246 6.246 16 C 0.062 3.938 17 C -0.162 4.162 18 C -0.129 4.129 19 C -0.151 4.151 20 C -0.099 4.099 21 C -0.131 4.131 22 C 0.044 3.956 23 H 0.102 0.898 24 H 0.123 0.877 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.153 0.847 32 H 0.115 0.885 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.132 -11.516 -1.696 12.352 hybrid contribution 0.769 1.285 0.022 1.498 sum 4.901 -10.231 -1.674 11.467 Atomic orbital electron populations 1.69895 1.06793 1.30791 1.40022 1.24765 0.94476 1.00842 0.88469 0.86155 0.80175 0.79971 0.79228 1.19140 1.19937 1.18628 1.30609 1.06152 1.11715 1.66937 0.87910 1.00722 0.72203 0.73002 0.72939 1.93352 1.72526 1.87449 1.45470 1.93345 1.72669 1.87593 1.45823 1.58029 1.62934 1.53994 1.09039 1.21535 1.00340 0.94232 0.87241 1.23187 0.98684 0.91444 0.89232 1.86040 1.43589 1.71722 1.23243 1.18588 0.93738 0.92979 0.88480 1.21204 0.97758 0.97807 0.99415 1.20956 0.98497 0.98731 0.94716 1.21217 1.00653 0.93026 1.00209 1.21049 0.94716 0.97842 0.96324 1.21025 0.99421 0.96421 0.96235 1.20214 0.97383 0.91796 0.86249 0.89845 0.87726 0.91101 0.91962 0.87778 0.85735 0.85979 0.85819 0.84655 0.88536 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.66 13.19 55.43 0.73 -23.93 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 3 Si 0.92 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -1.02 -27.78 9.75 30.60 0.30 -27.48 16 8 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 9 S 2.71 71.31 4.90 -107.50 -0.53 70.78 16 10 O -1.00 -28.34 16.87 -57.17 -0.96 -29.31 16 11 O -1.00 -28.85 16.60 -57.17 -0.95 -29.80 16 12 N -1.01 -20.64 3.00 -115.58 -0.35 -20.98 16 13 C 0.09 1.60 6.20 -4.53 -0.03 1.57 16 14 C 0.05 0.77 6.68 36.74 0.25 1.01 16 15 O -0.33 -5.30 9.90 -18.37 -0.18 -5.49 16 16 C 0.11 1.76 5.61 -39.17 -0.22 1.54 16 17 C -0.14 -2.03 10.00 -39.40 -0.39 -2.42 16 18 C -0.11 -1.42 10.02 -39.61 -0.40 -1.82 16 19 C -0.13 -1.84 10.06 -39.48 -0.40 -2.23 16 20 C -0.08 -1.32 9.71 -39.72 -0.39 -1.71 16 21 C -0.13 -2.26 5.49 -104.18 -0.57 -2.83 16 22 C 0.17 3.08 5.54 -4.64 -0.03 3.06 16 23 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.10 1.85 6.94 -51.93 -0.36 1.49 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 1.02 7.88 -51.93 -0.41 0.61 16 27 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.14 2.18 8.01 -52.49 -0.42 1.76 16 32 H 0.10 1.77 7.25 -51.93 -0.38 1.39 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 294.64 15.07 4.44 4.44 Total: -1.00 -34.39 294.64 -8.44 -42.83 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.65 Total: 3.87 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -1.97 Total: -27.75 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.38 Total: -44.92 kcal Atomic # 8 Polarization: -62.50 SS G_CDS: -2.10 Total: -64.59 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 71.31 SS G_CDS: -0.53 Total: 70.78 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.39 -8.44 -42.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063013084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.987 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds