Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00182 * 2 1 4 4 H 1.48498 * 109.47360 * 270.00169 * 3 2 1 5 5 H 1.48501 * 109.47022 * 30.00082 * 3 2 1 6 6 H 1.48503 * 109.47205 * 150.00031 * 3 2 1 7 7 C 1.37884 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00314 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99528 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40289 * 66.46245 * 9 7 2 11 11 O 1.42094 * 106.40254 * 293.54164 * 9 7 2 12 12 N 1.65602 * 107.21870 * 179.97438 * 9 7 2 13 13 C 1.46379 * 119.76732 * 89.99924 * 12 9 7 14 14 C 1.52176 * 111.20635 * 116.25792 * 13 12 9 15 15 O 1.43254 * 110.14231 * 61.17030 * 14 13 12 16 16 C 1.35558 * 115.79475 * 270.79054 * 15 14 13 17 17 C 1.38865 * 120.19961 * 252.54422 * 16 15 14 18 18 C 1.38107 * 119.88419 * 177.19528 * 17 16 15 19 19 C 1.38299 * 120.35079 * 359.29175 * 18 17 16 20 20 C 1.38444 * 119.95371 * 0.81897 * 19 18 17 21 21 C 1.37659 * 119.67883 * 0.34482 * 20 19 18 22 22 C 1.46643 * 119.77564 * 270.02462 * 12 9 7 23 23 H 0.96992 * 119.99687 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.13474 * 355.81192 * 13 12 9 25 25 H 1.09003 * 109.08315 * 236.67060 * 13 12 9 26 26 H 1.08998 * 109.36166 * 300.96260 * 14 13 12 27 27 H 1.08994 * 109.24966 * 181.30053 * 14 13 12 28 28 H 1.07996 * 120.05674 * 356.91267 * 17 16 15 29 29 H 1.08003 * 119.82982 * 179.27236 * 18 17 16 30 30 H 1.07992 * 120.02250 * 180.84318 * 19 18 17 31 31 H 1.08001 * 120.16360 * 180.36956 * 20 19 18 32 32 H 1.08998 * 109.58690 * 20.19895 * 22 12 9 33 33 H 1.08991 * 109.58772 * 140.48514 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4519 -2.7955 1.2494 12 7 2.2483 -3.9355 -0.0019 13 6 2.7429 -4.4695 1.2681 14 6 2.3648 -5.9341 1.4339 15 8 2.9498 -6.7163 0.3860 16 6 2.2051 -6.8462 -0.7392 17 6 1.5930 -8.0568 -1.0359 18 6 0.7886 -8.1655 -2.1533 19 6 0.5772 -7.0707 -2.9714 20 6 1.1873 -5.8624 -2.6806 21 6 2.0081 -5.7607 -1.5802 22 6 2.7423 -4.4691 -1.2754 23 1 -0.4849 0.8400 0.0004 24 1 2.3137 -3.8946 2.0887 25 1 3.8285 -4.3754 1.2956 26 1 1.2800 -6.0338 1.3967 27 1 2.7276 -6.2920 2.3974 28 1 1.7494 -8.9130 -0.3966 29 1 0.3225 -9.1106 -2.3898 30 1 -0.0636 -7.1581 -3.8362 31 1 1.0199 -5.0037 -3.3138 32 1 2.5573 -3.7469 -2.0705 33 1 3.8121 -4.6632 -1.1998 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063013084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -120.262141 kcal Electronic energy + Delta-G solvation = -20878.685677 eV Core-core repulsion = 17609.171530 eV Total energy + Delta-G solvation = -3269.514148 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36608 -38.46725 -37.48014 -36.87550 -36.15184 -35.18478 -32.94143 -31.51583 -29.36018 -28.27574 -26.97585 -24.10200 -22.84840 -22.27438 -20.84547 -19.54438 -18.63128 -18.37036 -17.29436 -17.11259 -16.70552 -16.43291 -16.15178 -15.93701 -15.47237 -15.26040 -14.81103 -14.45307 -14.00493 -13.81584 -13.41543 -13.24912 -13.06350 -13.02966 -12.87691 -12.78719 -12.52244 -12.35027 -12.31748 -12.11641 -11.79638 -11.27679 -11.05525 -11.00020 -9.99846 -9.81111 -9.47362 -8.77608 -7.52315 0.07929 0.29714 0.46361 1.32579 1.32911 1.49390 2.18348 2.41263 2.54822 2.75456 3.10283 3.69357 3.77137 3.86129 4.00347 4.05180 4.13577 4.22273 4.28839 4.44485 4.51677 4.54539 4.61661 4.68761 4.76273 4.87693 5.01659 5.12885 5.26890 5.40450 5.53979 5.62194 5.81860 5.85690 5.87281 6.50519 6.74828 8.17750 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.006058 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.278642 B = 4620.608671 C = 5017.765759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.262 1.262 6 H -0.247 1.247 7 C -1.041 5.041 8 H 0.119 0.881 9 S 2.714 3.286 10 O -1.031 7.031 11 O -1.039 7.039 12 N -1.003 6.003 13 C 0.082 3.918 14 C 0.054 3.946 15 O -0.329 6.329 16 C 0.086 3.914 17 C -0.143 4.143 18 C -0.101 4.101 19 C -0.133 4.133 20 C -0.105 4.105 21 C -0.156 4.156 22 C 0.165 3.835 23 H 0.299 0.701 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.044 0.956 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 -12.605 -1.675 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.171 1.171 7 C -1.174 5.174 8 H 0.137 0.863 9 S 2.816 3.184 10 O -1.022 7.022 11 O -1.029 7.029 12 N -0.839 5.839 13 C -0.044 4.044 14 C -0.022 4.022 15 O -0.245 6.245 16 C 0.042 3.958 17 C -0.161 4.161 18 C -0.119 4.119 19 C -0.150 4.150 20 C -0.124 4.124 21 C -0.158 4.158 22 C 0.040 3.960 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.063 0.937 27 H 0.165 0.835 28 H 0.168 0.832 29 H 0.180 0.820 30 H 0.169 0.831 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.494 -12.752 -1.604 13.977 hybrid contribution 0.341 1.528 -0.037 1.566 sum 5.835 -11.224 -1.640 12.756 Atomic orbital electron populations 1.69988 1.08787 1.32389 1.41374 1.26041 0.95388 1.05394 0.87481 0.85121 0.79158 0.74720 0.80136 1.17805 1.18590 1.17058 1.30972 1.07121 1.12558 1.66789 0.86330 1.00240 0.72765 0.73686 0.71678 1.93294 1.74191 1.88153 1.46527 1.93285 1.74340 1.88335 1.46990 1.57543 1.62189 1.53003 1.11211 1.21876 1.01853 0.95432 0.85217 1.23277 0.97897 0.90169 0.90890 1.86040 1.43803 1.71515 1.23166 1.18835 0.94741 0.93646 0.88580 1.21562 0.96940 0.97571 1.00035 1.21424 0.97243 0.99851 0.93395 1.21573 1.00113 0.92218 1.01130 1.21172 0.95724 0.98920 0.96610 1.21047 1.00759 0.96450 0.97532 1.20381 0.98814 0.92083 0.84690 0.89061 0.88810 0.88269 0.93726 0.83519 0.83214 0.81997 0.83134 0.85846 0.89915 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.49 13.19 21.45 0.28 -53.21 16 2 C 0.07 3.89 5.46 84.66 0.46 4.35 16 3 Si 0.99 41.15 29.54 68.60 2.03 43.17 16 4 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 7 C -1.04 -57.55 9.75 67.74 0.66 -56.88 16 8 H 0.12 5.93 7.81 -2.92 -0.02 5.90 16 9 S 2.71 147.78 4.90 -56.49 -0.28 147.50 16 10 O -1.03 -61.39 16.87 -128.00 -2.16 -63.55 16 11 O -1.04 -62.08 16.60 -128.00 -2.12 -64.20 16 12 N -1.00 -41.72 3.00 -519.60 -1.56 -43.27 16 13 C 0.08 2.76 6.20 86.13 0.53 3.29 16 14 C 0.05 1.55 6.68 71.71 0.48 2.03 16 15 O -0.33 -9.97 9.90 -88.64 -0.88 -10.85 16 16 C 0.09 2.74 5.61 22.53 0.13 2.86 16 17 C -0.14 -3.66 10.00 22.39 0.22 -3.44 16 18 C -0.10 -2.28 10.02 22.25 0.22 -2.06 16 19 C -0.13 -3.43 10.06 22.33 0.22 -3.21 16 20 C -0.11 -3.49 9.71 22.18 0.22 -3.28 16 21 C -0.16 -5.48 5.49 -19.58 -0.11 -5.59 16 22 C 0.17 6.11 5.54 85.91 0.48 6.59 16 23 H 0.30 16.04 8.31 -92.71 -0.77 15.27 16 24 H 0.09 3.36 6.94 -2.39 -0.02 3.34 16 25 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.04 1.44 7.88 -2.39 -0.02 1.42 16 27 H 0.15 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 31 H 0.12 4.22 8.01 -2.91 -0.02 4.20 16 32 H 0.08 3.20 7.25 -2.39 -0.02 3.18 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -76.79 294.64 -0.05 -76.83 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 1.12 Total: 22.92 kcal Atomic # 6 Polarization: -58.86 SS G_CDS: 3.52 Total: -55.34 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -1.27 Total: -96.49 kcal Atomic # 8 Polarization: -133.44 SS G_CDS: -5.16 Total: -138.60 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 147.78 SS G_CDS: -0.28 Total: 147.50 kcal Total: -76.79 -0.05 -76.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063013084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.430 kcal (2) G-P(sol) polarization free energy of solvation -76.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds