Wall clock time and date at job start Tue Mar 31 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46577 * 2 1 4 4 C 1.50699 * 109.47045 * 119.99388 * 2 1 3 5 5 H 1.08001 * 119.99476 * 120.00531 * 4 2 1 6 6 C 1.37871 * 120.00747 * 300.00490 * 4 2 1 7 7 N 1.31515 * 120.00421 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99757 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46988 * 89.99874 * 8 6 4 10 10 H 1.48503 * 109.46905 * 209.99848 * 8 6 4 11 11 H 1.48494 * 109.47012 * 329.99841 * 8 6 4 12 12 N 1.46494 * 109.47066 * 240.00213 * 2 1 3 13 13 C 1.46502 * 120.00109 * 299.99504 * 12 2 1 14 14 C 1.34775 * 119.99960 * 119.99882 * 12 2 1 15 15 O 1.21622 * 120.00009 * 0.02562 * 14 12 2 16 16 C 1.47205 * 119.99933 * 179.73446 * 14 12 2 17 17 C 1.36630 * 125.15530 * 171.63448 * 16 14 12 18 18 C 1.36768 * 114.74926 * 179.78715 * 17 16 14 19 19 C 1.36691 * 114.73585 * 0.49740 * 18 17 16 20 20 C 1.47007 * 125.16368 * 179.72876 * 19 18 17 21 21 O 1.21549 * 120.00428 * 0.02659 * 20 19 18 22 22 O 1.34827 * 120.00017 * 180.02562 * 20 19 18 23 23 S 1.75827 * 125.15740 * 351.93224 * 16 14 12 24 24 H 1.09001 * 109.46695 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47307 * 299.99454 * 1 2 3 26 26 H 1.08997 * 109.47141 * 60.00022 * 1 2 3 27 27 H 0.97000 * 120.00189 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46685 * 263.44015 * 13 12 2 29 29 H 1.09003 * 109.46918 * 23.43508 * 13 12 2 30 30 H 1.08997 * 109.47272 * 143.43782 * 13 12 2 31 31 H 1.07998 * 122.62550 * 359.97225 * 17 16 14 32 32 H 1.08001 * 122.63177 * 180.22649 * 18 17 16 33 33 H 0.96695 * 117.00524 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6247 1.2790 2.6541 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9951 3.9069 11 1 0.8469 2.1764 1.4921 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0874 1.1288 -1.8906 16 6 3.2887 -0.7311 -3.2823 17 6 3.9397 -0.1348 -4.3251 18 6 4.3111 -0.9853 -5.3297 19 6 3.9610 -2.2917 -5.1319 20 6 4.2404 -3.3935 -6.0641 21 8 4.8270 -3.1744 -7.1058 22 8 3.8460 -4.6473 -5.7634 23 16 3.1259 -2.4540 -3.5930 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.9041 -0.5273 4.4376 28 1 2.4720 -2.7346 -1.0750 29 1 0.7486 -2.3310 -0.8870 30 1 1.5097 -2.2574 -2.4944 31 1 4.1475 0.9246 -4.3524 32 1 4.8358 -0.6501 -6.2122 33 1 4.0517 -5.3386 -6.4074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:41 Heat of formation + Delta-G solvation = -73.583587 kcal Electronic energy + Delta-G solvation = -19661.353117 eV Core-core repulsion = 16393.863103 eV Total energy + Delta-G solvation = -3267.490014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29890 -39.54569 -37.42912 -36.23337 -35.65017 -33.01920 -31.10945 -29.74675 -26.84054 -26.09539 -25.18618 -22.90875 -21.99535 -19.77306 -19.07221 -18.36750 -17.63130 -16.92957 -16.50970 -15.91616 -15.75473 -15.56445 -15.10394 -14.42573 -13.94938 -13.38578 -13.26102 -13.08477 -12.93871 -12.79403 -12.54639 -12.34154 -11.99749 -11.84740 -11.82473 -11.28208 -11.15252 -10.84916 -10.46135 -10.25234 -9.77375 -9.57172 -9.38450 -9.01537 -8.73605 -8.67366 -7.96002 -6.23091 -4.25455 -0.04983 1.26976 1.68971 1.87107 2.70745 2.73214 3.17188 3.31687 3.32698 3.42977 3.47034 4.27251 4.67126 4.97110 5.06615 5.09971 5.21338 5.25240 5.65930 5.80413 5.89592 5.97235 6.11201 6.13805 6.15601 6.19218 6.33135 6.70333 6.93618 7.09963 7.48247 7.58476 7.89804 8.30858 8.55762 8.77281 9.36396 10.89290 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.004297 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.060178 B = 6514.047379 C = 6893.602590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.231 3.769 3 H 0.067 0.933 4 C -0.533 4.533 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.882 3.118 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.576 5.576 13 C 0.070 3.930 14 C 0.572 3.428 15 O -0.530 6.530 16 C -0.208 4.208 17 C -0.092 4.092 18 C -0.051 4.051 19 C -0.285 4.285 20 C 0.560 3.440 21 O -0.510 6.510 22 O -0.511 6.511 23 S 0.272 5.728 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.267 0.733 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 -5.972 -16.274 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.130 3.870 3 H 0.085 0.915 4 C -0.571 4.571 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.187 1.187 12 N -0.306 5.306 13 C -0.076 4.076 14 C 0.357 3.643 15 O -0.409 6.409 16 C -0.331 4.331 17 C -0.124 4.124 18 C -0.085 4.085 19 C -0.403 4.403 20 C 0.404 3.596 21 O -0.400 6.400 22 O -0.323 6.323 23 S 0.543 5.457 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.177 0.823 32 H 0.170 0.830 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -0.854 -6.270 -15.135 16.404 hybrid contribution 0.226 1.283 -0.984 1.633 sum -0.628 -4.987 -16.119 16.884 Atomic orbital electron populations 1.22490 0.98697 1.01297 0.99656 1.19419 0.90239 0.95281 0.82109 0.91509 1.21107 1.33187 1.14497 0.88313 0.90182 1.24844 0.95576 0.96547 0.95549 1.69862 1.44830 1.40077 0.98040 0.86931 0.80439 0.83773 0.77682 1.20273 1.21989 1.18736 1.47823 1.48433 1.11624 1.22724 1.21877 1.03645 0.83198 0.98866 1.17094 0.79503 0.86187 0.81493 1.90787 1.58318 1.15952 1.75857 1.25481 1.08354 0.97955 1.01296 1.20463 0.98296 1.02141 0.91546 1.20481 0.98065 0.90043 0.99926 1.24359 1.14954 0.95980 1.04987 1.19514 0.74877 0.81555 0.83685 1.90913 1.39331 1.84379 1.25408 1.84587 1.75997 1.18355 1.53401 1.85007 1.47723 1.03215 1.09721 0.92358 0.92790 0.94540 0.92275 0.91390 0.88091 0.92412 0.82271 0.82965 0.72398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.66 37.16 0.32 -2.98 16 2 C 0.23 5.30 2.22 -69.08 -0.15 5.14 16 3 H 0.07 1.70 5.96 -51.93 -0.31 1.40 16 4 C -0.53 -14.10 8.95 -34.44 -0.31 -14.41 16 5 H 0.08 2.28 7.89 -52.49 -0.41 1.86 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 8 Si 0.88 20.98 24.37 -169.99 -4.14 16.84 16 9 H -0.28 -6.25 6.87 56.52 0.39 -5.86 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 12 N -0.58 -11.30 2.75 -176.62 -0.49 -11.79 16 13 C 0.07 1.06 8.11 59.85 0.49 1.55 16 14 C 0.57 11.16 7.66 -12.62 -0.10 11.06 16 15 O -0.53 -12.12 16.17 5.26 0.09 -12.03 16 16 C -0.21 -3.18 6.25 -36.52 -0.23 -3.41 16 17 C -0.09 -1.23 9.89 -40.69 -0.40 -1.63 16 18 C -0.05 -0.61 9.88 -40.67 -0.40 -1.02 16 19 C -0.28 -3.48 6.46 -36.59 -0.24 -3.71 16 20 C 0.56 6.53 8.32 34.28 0.29 6.81 16 21 O -0.51 -7.08 17.60 -19.30 -0.34 -7.42 16 22 O -0.51 -4.36 13.28 -40.84 -0.54 -4.90 16 23 S 0.27 3.32 17.89 -107.50 -1.92 1.40 16 24 H 0.06 1.07 6.67 -51.93 -0.35 0.72 16 25 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 29 H 0.10 1.49 6.45 -51.93 -0.33 1.15 16 30 H 0.06 0.73 4.62 -23.16 -0.11 0.62 16 31 H 0.16 2.00 8.05 -52.49 -0.42 1.58 16 32 H 0.15 1.56 8.04 -52.49 -0.42 1.14 16 33 H 0.42 1.49 9.11 45.56 0.42 1.91 16 LS Contribution 292.62 15.07 4.41 4.41 Total: -1.00 -33.23 292.62 -5.11 -38.34 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -2.12 Total: 0.91 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.83 Total: -0.54 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.29 Total: -37.00 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.80 Total: -24.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.14 Total: 16.84 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.92 Total: 1.40 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.23 -5.11 -38.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.240 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds