Wall clock time and date at job start Tue Mar 31 2020 06:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46577 * 2 1 4 4 C 1.50699 * 109.47045 * 119.99388 * 2 1 3 5 5 H 1.08001 * 119.99476 * 120.00531 * 4 2 1 6 6 C 1.37871 * 120.00747 * 300.00490 * 4 2 1 7 7 N 1.31515 * 120.00421 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99757 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46988 * 89.99874 * 8 6 4 10 10 H 1.48503 * 109.46905 * 209.99848 * 8 6 4 11 11 H 1.48494 * 109.47012 * 329.99841 * 8 6 4 12 12 N 1.46494 * 109.47066 * 240.00213 * 2 1 3 13 13 C 1.46502 * 120.00109 * 299.99504 * 12 2 1 14 14 C 1.34775 * 119.99960 * 119.99882 * 12 2 1 15 15 O 1.21622 * 120.00009 * 0.02562 * 14 12 2 16 16 C 1.47205 * 119.99933 * 179.73446 * 14 12 2 17 17 C 1.36630 * 125.15530 * 171.63448 * 16 14 12 18 18 C 1.36768 * 114.74926 * 179.78715 * 17 16 14 19 19 C 1.36691 * 114.73585 * 0.49740 * 18 17 16 20 20 C 1.47007 * 125.16368 * 179.72876 * 19 18 17 21 21 O 1.21549 * 120.00428 * 0.02659 * 20 19 18 22 22 O 1.34827 * 120.00017 * 180.02562 * 20 19 18 23 23 S 1.75827 * 125.15740 * 351.93224 * 16 14 12 24 24 H 1.09001 * 109.46695 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47307 * 299.99454 * 1 2 3 26 26 H 1.08997 * 109.47141 * 60.00022 * 1 2 3 27 27 H 0.97000 * 120.00189 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46685 * 263.44015 * 13 12 2 29 29 H 1.09003 * 109.46918 * 23.43508 * 13 12 2 30 30 H 1.08997 * 109.47272 * 143.43782 * 13 12 2 31 31 H 1.07998 * 122.62550 * 359.97225 * 17 16 14 32 32 H 1.08001 * 122.63177 * 180.22649 * 18 17 16 33 33 H 0.96695 * 117.00524 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6247 1.2790 2.6541 9 1 -0.8029 0.8725 2.6998 10 1 0.9758 1.9951 3.9069 11 1 0.8469 2.1764 1.4921 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0874 1.1288 -1.8906 16 6 3.2887 -0.7311 -3.2823 17 6 3.9397 -0.1348 -4.3251 18 6 4.3111 -0.9853 -5.3297 19 6 3.9610 -2.2917 -5.1319 20 6 4.2404 -3.3935 -6.0641 21 8 4.8270 -3.1744 -7.1058 22 8 3.8460 -4.6473 -5.7634 23 16 3.1259 -2.4540 -3.5930 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.9041 -0.5273 4.4376 28 1 2.4720 -2.7346 -1.0750 29 1 0.7486 -2.3310 -0.8870 30 1 1.5097 -2.2574 -2.4944 31 1 4.1475 0.9246 -4.3524 32 1 4.8358 -0.6501 -6.2122 33 1 4.0517 -5.3386 -6.4074 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:40 Heat of formation + Delta-G solvation = -98.110559 kcal Electronic energy + Delta-G solvation = -19662.416686 eV Core-core repulsion = 16393.863103 eV Total energy + Delta-G solvation = -3268.553583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20373 -41.01439 -38.51187 -37.32678 -37.01794 -34.90293 -32.79415 -30.97018 -28.16555 -27.32966 -27.04667 -24.07924 -23.23702 -21.26637 -20.05526 -19.45808 -19.09019 -18.43890 -17.96259 -17.25402 -16.86446 -16.75994 -16.50154 -16.00986 -15.23873 -14.86926 -14.58986 -14.28481 -14.20750 -14.14811 -14.05035 -13.77501 -13.52778 -13.11804 -13.05416 -12.69081 -12.65990 -12.10887 -12.06229 -11.61894 -11.51434 -11.39267 -11.05255 -10.79852 -10.14571 -9.76259 -9.44030 -8.34835 -6.40603 -1.11444 0.21251 0.65452 0.83517 1.28182 1.38422 1.46183 1.71169 1.93024 1.99637 2.09320 2.28397 3.00305 3.39796 4.01058 4.05280 4.15999 4.26583 4.38094 4.44385 4.53677 4.62941 4.78715 4.84991 4.92942 5.03485 5.14346 5.28522 5.40884 5.44934 5.59001 6.14936 6.47085 6.62668 6.86510 7.02173 7.26514 8.80800 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.004297 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.060178 B = 6514.047379 C = 6893.602590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.232 3.768 3 H 0.037 0.963 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.027 3.973 7 N -0.937 5.937 8 Si 0.939 3.061 9 H -0.251 1.251 10 H -0.297 1.297 11 H -0.260 1.260 12 N -0.585 5.585 13 C 0.065 3.935 14 C 0.568 3.432 15 O -0.577 6.577 16 C -0.247 4.247 17 C -0.077 4.077 18 C -0.052 4.052 19 C -0.281 4.281 20 C 0.567 3.433 21 O -0.533 6.533 22 O -0.503 6.503 23 S 0.316 5.684 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.269 0.731 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 -6.889 -18.332 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.129 3.871 3 H 0.055 0.945 4 C -0.568 4.568 5 H 0.067 0.933 6 C -0.173 4.173 7 N -0.576 5.576 8 Si 0.766 3.234 9 H -0.176 1.176 10 H -0.225 1.225 11 H -0.185 1.185 12 N -0.314 5.314 13 C -0.079 4.079 14 C 0.356 3.644 15 O -0.459 6.459 16 C -0.369 4.369 17 C -0.110 4.110 18 C -0.085 4.085 19 C -0.400 4.400 20 C 0.411 3.589 21 O -0.425 6.425 22 O -0.317 6.317 23 S 0.588 5.412 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -1.893 -7.261 -17.219 18.783 hybrid contribution 0.658 1.411 -0.457 1.623 sum -1.236 -5.850 -17.676 18.660 Atomic orbital electron populations 1.22357 0.96004 1.02794 1.00319 1.19102 0.92236 0.93569 0.82143 0.94465 1.21310 1.32114 1.13376 0.89987 0.93340 1.25602 0.97042 0.99354 0.95254 1.69990 1.46868 1.42075 0.98645 0.86018 0.80017 0.80214 0.77198 1.17650 1.22508 1.18515 1.47827 1.48608 1.13180 1.21818 1.22104 1.03939 0.80769 1.01116 1.17596 0.78626 0.85867 0.82343 1.90743 1.59900 1.18050 1.77229 1.25077 1.11146 1.00086 1.00618 1.20601 0.96741 1.02602 0.91055 1.20590 0.98121 0.89721 1.00109 1.24615 1.13958 0.96583 1.04796 1.19341 0.74376 0.82212 0.82947 1.90918 1.40421 1.84908 1.26266 1.84538 1.75215 1.17813 1.54176 1.84674 1.47168 1.00238 1.09117 0.90509 0.93621 0.92242 0.92186 0.91298 0.87435 0.89397 0.82028 0.81081 0.69674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.05 8.66 71.98 0.62 -5.43 16 2 C 0.23 10.68 2.22 44.25 0.10 10.78 16 3 H 0.04 1.94 5.96 -2.39 -0.01 1.93 16 4 C -0.53 -28.58 8.95 25.60 0.23 -28.36 16 5 H 0.05 2.85 7.89 -2.91 -0.02 2.83 16 6 C 0.03 1.49 5.45 84.65 0.46 1.95 16 7 N -0.94 -55.90 13.96 21.44 0.30 -55.60 16 8 Si 0.94 43.35 24.37 68.60 1.67 45.02 16 9 H -0.25 -10.55 6.87 99.48 0.68 -9.87 16 10 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 11 H -0.26 -11.85 6.53 99.48 0.65 -11.20 16 12 N -0.59 -22.83 2.75 -830.94 -2.29 -25.12 16 13 C 0.06 1.89 8.11 127.77 1.04 2.93 16 14 C 0.57 22.27 7.66 86.60 0.66 22.93 16 15 O -0.58 -27.10 16.17 -4.10 -0.07 -27.16 16 16 C -0.25 -7.30 6.25 24.25 0.15 -7.15 16 17 C -0.08 -1.94 9.89 21.55 0.21 -1.73 16 18 C -0.05 -1.12 9.88 21.56 0.21 -0.91 16 19 C -0.28 -6.07 6.46 24.21 0.16 -5.92 16 20 C 0.57 11.46 8.32 70.12 0.58 12.04 16 21 O -0.53 -13.35 17.60 19.68 0.35 -13.01 16 22 O -0.50 -6.76 13.28 -57.39 -0.76 -7.52 16 23 S 0.32 6.95 17.89 -56.49 -1.01 5.94 16 24 H 0.08 2.64 6.67 -2.39 -0.02 2.62 16 25 H 0.05 1.83 3.27 -2.39 -0.01 1.83 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 28 H 0.07 1.99 7.75 -2.39 -0.02 1.97 16 29 H 0.11 2.97 6.45 -2.39 -0.02 2.96 16 30 H 0.09 1.99 4.62 -20.68 -0.10 1.89 16 31 H 0.16 3.94 8.05 -2.91 -0.02 3.92 16 32 H 0.17 3.03 8.04 -2.91 -0.02 3.01 16 33 H 0.44 1.51 9.11 -74.06 -0.67 0.83 16 Total: -1.00 -73.40 292.62 2.96 -70.44 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.34 Total: 5.87 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.43 Total: 1.14 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -1.99 Total: -80.72 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -0.48 Total: -47.69 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.67 Total: 45.02 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -1.01 Total: 5.94 kcal Total: -73.40 2.96 -70.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.673 kcal (2) G-P(sol) polarization free energy of solvation -73.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds