Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47075 * 2 1 4 4 C 1.50699 * 109.47591 * 239.99992 * 2 1 3 5 5 H 1.07998 * 120.00135 * 240.00238 * 4 2 1 6 6 C 1.37873 * 119.99985 * 59.99315 * 4 2 1 7 7 N 1.31511 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46832 * 90.00489 * 8 6 4 10 10 H 1.48498 * 109.47218 * 210.00380 * 8 6 4 11 11 H 1.48496 * 109.47171 * 330.00650 * 8 6 4 12 12 N 1.46498 * 109.47321 * 119.99541 * 2 1 3 13 13 C 1.46505 * 119.99839 * 60.00088 * 12 2 1 14 14 C 1.34776 * 120.00333 * 240.00490 * 12 2 1 15 15 O 1.21614 * 119.99991 * 6.07408 * 14 12 2 16 16 C 1.47206 * 120.00193 * 186.07971 * 14 12 2 17 17 C 1.36624 * 125.15797 * 186.84606 * 16 14 12 18 18 C 1.36766 * 114.75207 * 179.97438 * 17 16 14 19 19 C 1.36691 * 114.73507 * 359.97438 * 18 17 16 20 20 C 1.47014 * 125.16766 * 180.02562 * 19 18 17 21 21 O 1.21555 * 119.99607 * 359.97438 * 20 19 18 22 22 O 1.34814 * 120.00087 * 179.97438 * 20 19 18 23 23 S 1.75837 * 109.67000 * 359.73736 * 19 18 17 24 24 H 1.08994 * 109.47141 * 300.00151 * 1 2 3 25 25 H 1.08997 * 109.46578 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47022 * 60.00429 * 1 2 3 27 27 H 0.97001 * 120.00579 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47199 * 95.97301 * 13 12 2 29 29 H 1.09001 * 109.46959 * 215.97362 * 13 12 2 30 30 H 1.08996 * 109.46982 * 335.97511 * 13 12 2 31 31 H 1.08002 * 122.62488 * 359.97301 * 17 16 14 32 32 H 1.08004 * 122.63557 * 179.97438 * 18 17 16 33 33 H 0.96708 * 117.00117 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4868 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7121 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 2.9962 1.1562 1.9500 16 6 3.3938 -0.7624 3.2138 17 6 4.0823 -0.1857 4.2433 18 6 4.5494 -1.0633 5.1825 19 6 4.2507 -2.3747 4.9385 20 6 4.6381 -3.5050 5.7951 21 8 5.2754 -3.3070 6.8110 22 8 4.2864 -4.7609 5.4538 23 16 3.3257 -2.5037 3.4486 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 0.7094 1.1616 -3.4844 28 1 2.4673 -2.7351 1.0657 29 1 1.5200 -2.2596 2.4956 30 1 0.7429 -2.3281 0.8956 31 1 4.2451 0.8799 4.3103 32 1 5.1102 -0.7453 6.0490 33 1 4.5641 -5.4714 6.0481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097767.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = -83.620655 kcal Electronic energy + Delta-G solvation = -19614.896387 eV Core-core repulsion = 16346.971134 eV Total energy + Delta-G solvation = -3267.925253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27559 -39.37887 -37.35105 -36.20049 -35.46354 -33.06979 -30.64981 -29.21128 -26.72030 -25.90021 -25.28054 -22.81129 -21.85569 -19.75484 -19.01938 -18.33031 -17.43173 -16.69210 -16.44875 -15.88830 -15.62886 -15.32085 -14.86266 -14.45809 -13.90548 -13.31943 -13.12726 -12.88156 -12.82009 -12.70818 -12.43772 -11.89619 -11.78838 -11.64648 -11.18363 -11.11049 -10.91544 -10.81038 -10.48776 -10.36202 -10.25083 -9.42187 -9.27951 -8.95760 -8.62770 -8.52470 -7.80026 -6.16035 -4.25171 0.00126 1.32125 1.74231 1.91790 2.74329 2.75621 3.21738 3.29401 3.31579 3.57247 3.63492 4.32421 4.80208 5.00474 5.11929 5.15819 5.27946 5.33615 5.73230 5.85347 5.97076 6.05172 6.17081 6.19106 6.65207 6.70477 6.92293 7.22214 7.35161 7.60343 7.60578 7.89305 8.04641 8.28806 8.63551 8.82142 9.41807 10.89287 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.004344 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.946080 B = 6443.982326 C = 6896.609877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.581 5.581 13 C 0.068 3.932 14 C 0.569 3.431 15 O -0.530 6.530 16 C -0.204 4.204 17 C -0.096 4.096 18 C -0.050 4.050 19 C -0.285 4.285 20 C 0.561 3.439 21 O -0.511 6.511 22 O -0.511 6.511 23 S 0.266 5.734 24 H 0.014 0.986 25 H 0.031 0.969 26 H 0.097 0.903 27 H 0.265 0.735 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 -9.665 12.954 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.085 0.915 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.078 4.078 14 C 0.354 3.646 15 O -0.409 6.409 16 C -0.326 4.326 17 C -0.128 4.128 18 C -0.084 4.084 19 C -0.403 4.403 20 C 0.404 3.596 21 O -0.401 6.401 22 O -0.324 6.324 23 S 0.537 5.463 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.177 0.823 32 H 0.170 0.830 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 2.233 -9.798 11.890 15.568 hybrid contribution 1.167 0.079 0.388 1.232 sum 3.400 -9.719 12.278 16.024 Atomic orbital electron populations 1.22116 0.97812 0.99550 1.01213 1.19088 0.91230 0.94566 0.79167 0.91479 1.21286 1.32301 1.13246 0.90092 0.92111 1.24882 0.94814 0.94913 0.99001 1.69869 1.36092 1.22414 1.23981 0.86462 0.79234 0.79304 0.82227 1.20518 1.21034 1.19867 1.48223 1.48080 1.11532 1.23349 1.21801 1.03096 0.83589 0.99326 1.17111 0.79811 0.86592 0.81127 1.90785 1.61707 1.13906 1.74538 1.25624 1.07380 0.97611 1.02019 1.20474 0.97984 1.02123 0.92235 1.20485 0.98213 0.89794 0.99893 1.24249 1.14557 0.95390 1.06095 1.19513 0.75592 0.81834 0.82648 1.90912 1.37905 1.85535 1.25743 1.84589 1.74712 1.17083 1.55974 1.84928 1.44632 1.02116 1.14627 0.96687 0.94959 0.88503 0.92520 0.92057 0.92404 0.88274 0.82267 0.82976 0.72439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.96 37.16 0.33 -3.05 16 2 C 0.26 6.34 2.62 -69.08 -0.18 6.15 16 3 H 0.07 1.91 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -13.73 8.37 -34.44 -0.29 -14.02 16 5 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.58 -11.94 2.75 -176.62 -0.49 -12.43 16 13 C 0.07 1.07 8.03 59.85 0.48 1.55 16 14 C 0.57 11.62 7.64 -12.62 -0.10 11.52 16 15 O -0.53 -12.71 16.18 5.27 0.09 -12.62 16 16 C -0.20 -3.25 6.22 -36.52 -0.23 -3.48 16 17 C -0.10 -1.34 9.89 -40.70 -0.40 -1.75 16 18 C -0.05 -0.62 9.88 -40.67 -0.40 -1.02 16 19 C -0.28 -3.59 6.46 -36.59 -0.24 -3.83 16 20 C 0.56 6.69 8.32 34.29 0.29 6.98 16 21 O -0.51 -7.22 17.60 -19.31 -0.34 -7.56 16 22 O -0.51 -4.48 13.28 -40.80 -0.54 -5.02 16 23 S 0.27 3.38 17.89 -107.50 -1.92 1.46 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.03 0.66 6.67 -51.93 -0.35 0.32 16 26 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.06 0.91 7.49 -51.93 -0.39 0.52 16 29 H 0.06 0.77 5.11 -27.21 -0.14 0.63 16 30 H 0.10 1.55 6.44 -51.93 -0.33 1.21 16 31 H 0.16 2.11 8.05 -52.49 -0.42 1.69 16 32 H 0.15 1.62 8.04 -52.48 -0.42 1.20 16 33 H 0.42 1.57 9.11 45.56 0.42 1.99 16 LS Contribution 299.56 15.07 4.51 4.51 Total: -1.00 -31.82 299.56 -6.18 -38.00 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -2.27 Total: 1.19 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.83 Total: 0.73 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.14 Total: -36.00 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.80 Total: -25.21 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.92 Total: 1.46 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.82 -6.18 -38.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097767.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.618 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds