Wall clock time and date at job start Tue Mar 31 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47075 * 2 1 4 4 C 1.50699 * 109.47591 * 239.99992 * 2 1 3 5 5 H 1.07998 * 120.00135 * 240.00238 * 4 2 1 6 6 C 1.37873 * 119.99985 * 59.99315 * 4 2 1 7 7 N 1.31511 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46832 * 90.00489 * 8 6 4 10 10 H 1.48498 * 109.47218 * 210.00380 * 8 6 4 11 11 H 1.48496 * 109.47171 * 330.00650 * 8 6 4 12 12 N 1.46498 * 109.47321 * 119.99541 * 2 1 3 13 13 C 1.46505 * 119.99839 * 60.00088 * 12 2 1 14 14 C 1.34776 * 120.00333 * 240.00490 * 12 2 1 15 15 O 1.21614 * 119.99991 * 6.07408 * 14 12 2 16 16 C 1.47206 * 120.00193 * 186.07971 * 14 12 2 17 17 C 1.36624 * 125.15797 * 186.84606 * 16 14 12 18 18 C 1.36766 * 114.75207 * 179.97438 * 17 16 14 19 19 C 1.36691 * 114.73507 * 359.97438 * 18 17 16 20 20 C 1.47014 * 125.16766 * 180.02562 * 19 18 17 21 21 O 1.21555 * 119.99607 * 359.97438 * 20 19 18 22 22 O 1.34814 * 120.00087 * 179.97438 * 20 19 18 23 23 S 1.75837 * 109.67000 * 359.73736 * 19 18 17 24 24 H 1.08994 * 109.47141 * 300.00151 * 1 2 3 25 25 H 1.08997 * 109.46578 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47022 * 60.00429 * 1 2 3 27 27 H 0.97001 * 120.00579 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47199 * 95.97301 * 13 12 2 29 29 H 1.09001 * 109.46959 * 215.97362 * 13 12 2 30 30 H 1.08996 * 109.46982 * 335.97511 * 13 12 2 31 31 H 1.08002 * 122.62488 * 359.97301 * 17 16 14 32 32 H 1.08004 * 122.63557 * 179.97438 * 18 17 16 33 33 H 0.96708 * 117.00117 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4868 -0.1415 -5.1122 11 1 3.6295 -1.7584 -3.7121 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 2.9962 1.1562 1.9500 16 6 3.3938 -0.7624 3.2138 17 6 4.0823 -0.1857 4.2433 18 6 4.5494 -1.0633 5.1825 19 6 4.2507 -2.3747 4.9385 20 6 4.6381 -3.5050 5.7951 21 8 5.2754 -3.3070 6.8110 22 8 4.2864 -4.7609 5.4538 23 16 3.3257 -2.5037 3.4486 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 0.7094 1.1616 -3.4844 28 1 2.4673 -2.7351 1.0657 29 1 1.5200 -2.2596 2.4956 30 1 0.7429 -2.3281 0.8956 31 1 4.2451 0.8799 4.3103 32 1 5.1102 -0.7453 6.0490 33 1 4.5641 -5.4714 6.0481 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097767.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:44 Heat of formation + Delta-G solvation = -105.390157 kcal Electronic energy + Delta-G solvation = -19615.840384 eV Core-core repulsion = 16346.971134 eV Total energy + Delta-G solvation = -3268.869250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19231 -40.91837 -38.47185 -37.23524 -36.99576 -34.92885 -32.16820 -30.67265 -28.08785 -27.34284 -27.04984 -23.98257 -23.19324 -21.30121 -20.01821 -19.42856 -18.82103 -18.27722 -17.91526 -17.03607 -16.81655 -16.71437 -16.38439 -16.06237 -15.16272 -14.59603 -14.51378 -14.29942 -14.14835 -14.01780 -13.69798 -13.49004 -13.07665 -12.98608 -12.73127 -12.68259 -12.65195 -12.20870 -12.16712 -12.07920 -11.58089 -11.21568 -11.01906 -10.52573 -10.12774 -9.70822 -9.38983 -8.15129 -6.32073 -1.10247 0.22656 0.66853 0.84654 1.43882 1.45767 1.55150 1.72648 1.93332 2.08944 2.14453 2.44958 3.13645 3.47069 4.03505 4.09532 4.16722 4.27192 4.47357 4.64848 4.84026 4.87543 4.90114 4.95899 5.02791 5.14688 5.42122 5.45245 5.52352 5.63450 5.98810 6.11977 6.59281 6.74214 6.87059 7.11717 7.40182 8.89508 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.004344 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.946080 B = 6443.982326 C = 6896.609877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.263 3.737 3 H 0.015 0.985 4 C -0.541 4.541 5 H 0.064 0.936 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.266 1.266 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.590 5.590 13 C 0.062 3.938 14 C 0.563 3.437 15 O -0.583 6.583 16 C -0.245 4.245 17 C -0.081 4.081 18 C -0.052 4.052 19 C -0.280 4.280 20 C 0.568 3.432 21 O -0.533 6.533 22 O -0.502 6.502 23 S 0.318 5.682 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.265 0.735 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.172 0.828 33 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -12.592 13.938 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.161 3.839 3 H 0.033 0.967 4 C -0.579 4.579 5 H 0.082 0.918 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.790 3.210 9 H -0.191 1.191 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.319 5.319 13 C -0.082 4.082 14 C 0.351 3.649 15 O -0.466 6.466 16 C -0.367 4.367 17 C -0.114 4.114 18 C -0.085 4.085 19 C -0.398 4.398 20 C 0.412 3.588 21 O -0.425 6.425 22 O -0.317 6.317 23 S 0.590 5.410 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.177 0.823 32 H 0.189 0.811 33 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 2.729 -12.808 12.891 18.376 hybrid contribution 1.046 0.910 0.193 1.400 sum 3.775 -11.898 13.084 18.083 Atomic orbital electron populations 1.21916 0.96661 1.00543 1.00268 1.18688 0.92062 0.92356 0.80766 0.96734 1.21543 1.32269 1.13288 0.90809 0.91756 1.25700 0.94961 0.95544 1.01941 1.70013 1.37138 1.23739 1.24558 0.85450 0.78901 0.78246 0.78391 1.19143 1.21356 1.19520 1.48155 1.48180 1.13264 1.22311 1.22059 1.03719 0.80947 1.01440 1.17655 0.79151 0.86283 0.81841 1.90738 1.63429 1.16309 1.76090 1.25155 1.09958 0.99959 1.01661 1.20597 0.96577 1.02565 0.91706 1.20573 0.98362 0.89463 1.00084 1.24526 1.13444 0.96047 1.05830 1.19309 0.75060 0.82497 0.81920 1.90920 1.38937 1.86043 1.26613 1.84536 1.74073 1.16578 1.56495 1.84547 1.43908 0.98604 1.13925 0.95982 0.92846 0.91041 0.92547 0.90717 0.89630 0.87893 0.82330 0.81059 0.69652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.27 8.96 71.98 0.64 -5.63 16 2 C 0.26 13.26 2.62 44.25 0.12 13.37 16 3 H 0.01 0.89 6.91 -2.38 -0.02 0.87 16 4 C -0.54 -28.26 8.37 25.60 0.21 -28.04 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -51.30 11.32 21.45 0.24 -51.06 16 8 Si 0.97 41.61 29.54 68.60 2.03 43.64 16 9 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 N -0.59 -24.42 2.75 -830.94 -2.29 -26.71 16 13 C 0.06 1.87 8.03 127.77 1.03 2.89 16 14 C 0.56 23.57 7.64 86.60 0.66 24.24 16 15 O -0.58 -29.52 16.18 -4.08 -0.07 -29.58 16 16 C -0.25 -7.65 6.22 24.25 0.15 -7.50 16 17 C -0.08 -2.19 9.89 21.55 0.21 -1.98 16 18 C -0.05 -1.16 9.88 21.56 0.21 -0.95 16 19 C -0.28 -6.21 6.46 24.21 0.16 -6.06 16 20 C 0.57 11.62 8.32 70.12 0.58 12.20 16 21 O -0.53 -13.49 17.60 19.66 0.35 -13.14 16 22 O -0.50 -6.75 13.28 -57.26 -0.76 -7.51 16 23 S 0.32 7.20 17.89 -56.49 -1.01 6.19 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.05 2.19 6.67 -2.39 -0.02 2.17 16 26 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 27 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.07 2.04 7.49 -2.39 -0.02 2.02 16 29 H 0.09 2.05 5.11 -18.11 -0.09 1.96 16 30 H 0.10 3.00 6.44 -2.39 -0.02 2.99 16 31 H 0.16 4.21 8.05 -2.91 -0.02 4.19 16 32 H 0.17 3.19 8.04 -2.91 -0.02 3.17 16 33 H 0.44 1.47 9.11 -74.05 -0.67 0.80 16 Total: -1.00 -70.85 299.56 3.33 -67.51 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.41 Total: 6.67 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.43 Total: 3.99 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.04 Total: -77.76 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.48 Total: -50.24 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 7.20 SS G_CDS: -1.01 Total: 6.19 kcal Total: -70.85 3.33 -67.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097767.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.879 kcal (2) G-P(sol) polarization free energy of solvation -70.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds