Wall clock time and date at job start Tue Mar 31 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00171 * 2 1 4 4 H 1.48502 * 109.46941 * 270.00074 * 3 2 1 5 5 H 1.48498 * 109.47263 * 30.00270 * 3 2 1 6 6 H 1.48501 * 109.46807 * 150.00425 * 3 2 1 7 7 C 1.37881 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00092 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47592 * 179.97438 * 9 7 2 11 11 O 1.45197 * 109.47196 * 179.97438 * 10 9 7 12 12 C 1.34715 * 116.99916 * 180.02562 * 11 10 9 13 13 O 1.21467 * 119.99564 * 0.02562 * 12 11 10 14 14 C 1.47732 * 119.99882 * 180.02562 * 12 11 10 15 15 C 1.39610 * 120.13748 * 304.74959 * 14 12 11 16 16 C 1.38165 * 119.81887 * 179.97438 * 15 14 12 17 17 F 1.35103 * 119.95051 * 179.97438 * 16 15 14 18 18 C 1.38605 * 120.09533 * 359.73001 * 16 15 14 19 19 C 1.38304 * 120.27785 * 0.54518 * 18 16 15 20 20 C 1.37981 * 120.17807 * 359.45357 * 19 18 16 21 21 N 1.48016 * 120.04804 * 180.25079 * 20 19 18 22 22 O 1.21799 * 120.00328 * 353.45569 * 21 20 19 23 23 O 1.21798 * 119.99940 * 173.45101 * 21 20 19 24 24 H 0.97000 * 119.99953 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47295 * 59.99413 * 9 7 2 26 26 H 1.09010 * 109.46786 * 299.99890 * 9 7 2 27 27 H 1.09001 * 109.46992 * 59.99579 * 10 9 7 28 28 H 1.08995 * 109.46844 * 299.99775 * 10 9 7 29 29 H 1.08002 * 120.09502 * 359.95782 * 15 14 12 30 30 H 1.08004 * 119.85883 * 180.27360 * 18 16 15 31 31 H 1.07997 * 119.90878 * 179.72356 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1943 0.0000 10 6 4.0214 -2.6368 -0.0001 11 8 5.4734 -2.6368 -0.0001 12 6 6.0849 -3.8371 -0.0008 13 8 5.4232 -4.8558 -0.0018 14 6 7.5602 -3.9145 -0.0003 15 6 8.2966 -3.2632 -0.9916 16 6 9.6761 -3.3394 -0.9845 17 9 10.3913 -2.7107 -1.9428 18 6 10.3275 -4.0559 0.0072 19 6 9.6018 -4.7073 0.9879 20 6 8.2237 -4.6387 0.9918 21 7 7.4501 -5.3324 2.0459 22 8 8.0189 -6.0606 2.8394 23 8 6.2446 -5.1749 2.1200 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6810 0.8905 26 1 3.8751 -0.6798 -0.8896 27 1 3.6583 -3.1504 -0.8903 28 1 3.6577 -3.1507 0.8896 29 1 7.7893 -2.7015 -1.7621 30 1 11.4062 -4.1093 0.0116 31 1 10.1153 -5.2675 1.7552 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064876459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:44 Heat of formation + Delta-G solvation = -101.833299 kcal Electronic energy + Delta-G solvation = -21436.162213 eV Core-core repulsion = 17601.234024 eV Total energy + Delta-G solvation = -3834.928189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.80399 -42.45284 -40.49411 -39.19700 -36.78535 -36.25445 -33.40371 -32.52807 -32.18114 -30.74909 -27.03932 -25.76955 -24.59956 -23.09896 -21.58651 -20.71592 -19.61969 -18.88439 -18.64891 -17.77459 -17.49762 -17.10826 -16.60447 -16.43359 -16.11812 -15.91021 -15.21468 -14.39375 -14.25933 -14.22620 -13.63475 -13.33952 -13.17506 -12.59181 -12.34451 -11.80406 -11.60140 -11.37286 -11.28164 -11.19793 -10.85451 -10.72064 -10.18575 -10.13882 -9.99044 -9.96060 -9.78070 -9.38723 -8.65117 -6.15257 -4.16829 -0.75734 -0.01738 0.89174 1.04184 2.04090 2.36418 2.64294 3.24165 3.24899 3.32879 3.36392 3.63798 3.90793 4.03685 4.17048 4.35734 4.65422 4.84340 4.93467 4.95028 5.10413 5.18011 5.61093 5.84253 5.92853 6.10628 6.37882 6.54006 7.07098 7.15734 7.43112 7.57117 7.78597 8.36766 8.86728 9.43771 10.97268 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.004308 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.451372 B = 6497.824019 C = 7500.468990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.077 0.923 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.348 6.348 12 C 0.496 3.504 13 O -0.462 6.462 14 C -0.006 4.006 15 C -0.111 4.111 16 C 0.154 3.846 17 F -0.114 7.114 18 C -0.136 4.136 19 C -0.027 4.027 20 C -0.022 4.022 21 N 0.020 4.980 22 O -0.156 6.156 23 O -0.118 6.118 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.172 0.828 30 H 0.166 0.834 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.623 -6.985 -1.231 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.095 0.905 9 C -0.046 4.046 10 C 0.010 3.990 11 O -0.265 6.265 12 C 0.336 3.664 13 O -0.348 6.348 14 C -0.009 4.009 15 C -0.131 4.131 16 C 0.134 3.866 17 F -0.092 7.092 18 C -0.155 4.155 19 C -0.046 4.046 20 C -0.105 4.105 21 N 0.543 4.457 22 O -0.370 6.370 23 O -0.340 6.340 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.190 0.810 30 H 0.184 0.816 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 24.628 -6.805 -1.771 25.612 hybrid contribution 0.182 0.771 0.026 0.793 sum 24.810 -6.033 -1.744 25.593 Atomic orbital electron populations 1.69889 1.06266 1.27240 1.49911 1.24921 0.94751 0.99115 0.94111 0.86768 0.80448 0.83395 0.78692 1.20069 1.21100 1.18820 1.20816 0.88073 0.95154 1.52547 0.90464 1.19649 0.97155 0.89881 0.97934 1.23585 0.70824 1.01986 1.02569 1.86571 1.27304 1.30024 1.82585 1.20373 0.87147 0.83752 0.75163 1.90936 1.65284 1.36009 1.42528 1.18933 0.92927 0.95145 0.93863 1.21375 0.92155 0.99523 1.00007 1.17749 0.89141 0.92687 0.87048 1.91625 1.77566 1.79225 1.60826 1.21346 1.02398 0.98095 0.93684 1.20849 0.89933 0.95559 0.98227 1.21126 0.92344 1.03831 0.93187 1.43391 1.01597 0.99903 1.00765 1.94518 1.72392 1.33978 1.36111 1.94741 0.95294 1.67043 1.76938 0.92378 0.95279 0.95825 0.91261 0.90690 0.81043 0.81612 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.53 -14.79 9.66 -34.44 -0.33 -15.12 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 16 10 C 0.08 1.72 5.41 37.16 0.20 1.92 16 11 O -0.35 -6.38 10.23 -40.53 -0.41 -6.79 16 12 C 0.50 8.33 5.98 34.61 0.21 8.54 16 13 O -0.46 -8.98 14.55 -27.26 -0.40 -9.38 16 14 C -0.01 -0.08 5.76 -105.00 -0.60 -0.68 16 15 C -0.11 -1.02 9.77 -39.10 -0.38 -1.40 16 16 C 0.15 1.09 7.29 -39.47 -0.29 0.80 16 17 F -0.11 -0.82 17.26 2.25 0.04 -0.78 16 18 C -0.14 -0.72 10.02 -39.42 -0.39 -1.11 16 19 C -0.03 -0.19 9.54 -39.65 -0.38 -0.57 16 20 C -0.02 -0.25 6.86 -79.53 -0.55 -0.80 16 21 N 0.02 0.31 4.45 34.16 0.15 0.46 16 22 O -0.16 -2.21 18.46 -29.46 -0.54 -2.75 16 23 O -0.12 -2.14 14.99 -37.09 -0.56 -2.69 16 24 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 26 H 0.02 0.54 7.57 -51.92 -0.39 0.14 16 27 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.17 0.31 8.06 -52.48 -0.42 -0.11 16 31 H 0.17 0.82 7.62 -52.49 -0.40 0.42 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -32.95 293.40 -6.38 -39.32 By element: Atomic # 1 Polarization: -2.73 SS G_CDS: -2.44 Total: -5.17 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.74 Total: -6.76 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.93 Total: -25.84 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.91 Total: -21.61 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 0.04 Total: -0.78 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.95 -6.38 -39.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064876459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.512 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds