Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99647 * 2 1 4 4 H 1.48501 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47200 * 299.99533 * 3 2 1 6 6 H 1.48492 * 109.47361 * 59.99850 * 3 2 1 7 7 C 1.37875 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46813 * 180.02562 * 9 7 2 11 11 S 1.81007 * 109.46895 * 180.02562 * 10 9 7 12 12 C 1.76207 * 99.99756 * 179.97438 * 11 10 9 13 13 N 1.31175 * 125.08033 * 359.97392 * 12 11 10 14 14 C 1.35669 * 109.75040 * 180.02562 * 13 12 11 15 15 N 1.33124 * 133.10989 * 180.02562 * 14 13 12 16 16 C 1.31643 * 121.54580 * 180.02562 * 15 14 13 17 17 C 1.38549 * 121.37449 * 359.97438 * 16 15 14 18 18 Cl 1.73596 * 120.28295 * 180.02562 * 17 16 15 19 19 C 1.38709 * 119.43175 * 0.24130 * 17 16 15 20 20 C 1.38668 * 118.22390 * 359.53464 * 19 17 16 21 21 N 1.36576 * 125.07600 * 179.97438 * 12 11 10 22 22 H 0.96998 * 126.44526 * 359.94363 * 21 12 11 23 23 H 0.97006 * 120.00247 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47069 * 59.99995 * 9 7 2 25 25 H 1.09006 * 109.47238 * 299.99873 * 9 7 2 26 26 H 1.08998 * 109.47381 * 60.00095 * 10 9 7 27 27 H 1.08996 * 109.47500 * 299.99763 * 10 9 7 28 28 H 1.08002 * 119.31056 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.88697 * 179.72666 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 16 1.3403 -5.2296 0.0011 12 6 2.6902 -6.3621 0.0020 13 7 3.9577 -6.0243 0.0024 14 6 4.7295 -7.1401 0.0025 15 7 6.0463 -7.3354 0.0033 16 6 6.5630 -8.5462 0.0027 17 6 5.7581 -9.6740 0.0017 18 17 6.4697 -11.2574 0.0015 19 6 4.3788 -9.5269 -0.0038 20 6 3.8562 -8.2425 0.0019 21 7 2.5730 -7.7229 0.0023 22 1 1.7462 -8.2300 0.0028 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8726 -3.6047 -0.8877 28 1 7.6367 -8.6629 0.0038 29 1 3.7293 -10.3898 -0.0091 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066318307.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = 66.086336 kcal Electronic energy + Delta-G solvation = -16192.616455 eV Core-core repulsion = 13268.351805 eV Total energy + Delta-G solvation = -2924.264650 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.36127 -38.63795 -36.79624 -33.91684 -33.65071 -31.46641 -30.93770 -29.86883 -25.49835 -24.57865 -23.33646 -22.04388 -21.21854 -18.88865 -18.03076 -17.08992 -16.62055 -15.99875 -15.96173 -15.15743 -14.53632 -14.04643 -13.99527 -13.66567 -13.49534 -13.37445 -12.22690 -12.22534 -11.80386 -11.63887 -11.21275 -11.02132 -10.89399 -10.66509 -10.36860 -10.35872 -9.76935 -9.46595 -9.23086 -9.22873 -9.07037 -8.48722 -7.50702 -6.12940 -4.17088 0.33689 0.92772 1.10661 1.64045 2.26069 2.40371 2.88495 3.27525 3.35465 3.41012 3.59389 3.77444 4.26744 4.39197 4.40576 4.66810 4.73655 5.23886 5.40071 5.44790 5.68258 5.91693 6.04842 6.11102 6.59432 6.78591 7.29274 7.40493 7.45608 7.77853 7.83152 8.18026 8.87893 9.47875 10.97987 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.040921 B = 0.003007 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.086454 B = 9310.566383 C = 9974.205572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.034 3.966 10 C -0.074 4.074 11 S -0.017 6.017 12 C 0.307 3.693 13 N -0.482 5.482 14 C 0.272 3.728 15 N -0.431 5.431 16 C 0.135 3.865 17 C -0.091 4.091 18 Cl -0.052 7.052 19 C -0.048 4.048 20 C 0.004 3.996 21 N -0.582 5.582 22 H 0.430 0.570 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.173 0.827 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 -21.932 -0.004 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.081 0.919 9 C -0.006 4.006 10 C -0.222 4.222 11 S 0.217 5.783 12 C -0.069 4.069 13 N -0.208 5.208 14 C 0.026 3.974 15 N -0.141 5.141 16 C -0.035 4.035 17 C -0.123 4.123 18 Cl -0.024 7.024 19 C -0.078 4.078 20 C -0.111 4.111 21 N -0.197 5.197 22 H 0.271 0.729 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.190 0.810 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.250 -20.505 -0.003 21.436 hybrid contribution 0.462 -0.919 0.000 1.028 sum 6.712 -21.424 -0.003 22.450 Atomic orbital electron populations 1.69967 1.06104 1.26950 1.50068 1.25001 0.94919 0.99414 0.94849 0.86422 0.80195 0.83114 0.77664 1.19470 1.20872 1.20878 1.21079 0.93346 0.89643 1.51750 0.91878 1.19033 0.93410 0.89474 0.98676 1.24119 1.01882 0.89805 1.06439 1.86025 1.02581 0.99903 1.89806 1.26320 0.98134 0.85225 0.97244 1.71046 0.98301 1.26214 1.25287 1.19734 0.89371 0.88340 0.99912 1.67058 1.10795 1.23512 1.12730 1.22665 1.00471 0.84603 0.95807 1.21567 0.93060 0.88052 1.09575 1.98375 1.83353 1.23597 1.97026 1.20144 0.93566 0.94452 0.99652 1.19593 0.86685 0.96165 1.08671 1.42873 1.06985 1.06079 1.63785 0.72919 0.92756 0.95295 0.95302 0.89118 0.89124 0.80978 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.29 55.43 0.74 -24.98 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 7 C -0.52 -14.04 9.11 -34.44 -0.31 -14.35 15 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 15 9 C 0.03 0.82 4.98 -27.88 -0.14 0.68 15 10 C -0.07 -1.49 5.09 37.16 0.19 -1.30 15 11 S -0.02 -0.27 22.31 -107.50 -2.40 -2.66 15 12 C 0.31 4.78 8.20 -88.39 -0.73 4.05 15 13 N -0.48 -8.77 10.56 -12.43 -0.13 -8.91 15 14 C 0.27 4.48 8.36 -156.98 -1.31 3.17 15 15 N -0.43 -6.66 10.42 -12.64 -0.13 -6.79 15 16 C 0.14 1.53 10.95 -17.52 -0.19 1.34 15 17 C -0.09 -0.90 6.34 -39.29 -0.25 -1.15 15 18 Cl -0.05 -0.42 28.98 -51.86 -1.50 -1.92 15 19 C -0.05 -0.48 9.99 -39.25 -0.39 -0.87 15 20 C 0.00 0.05 7.31 -83.81 -0.61 -0.56 15 21 N -0.58 -6.98 6.28 -10.53 -0.07 -7.05 15 22 H 0.43 3.50 8.96 -40.82 -0.37 3.14 15 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.09 1.85 8.14 -51.92 -0.42 1.43 15 27 H 0.09 1.85 8.14 -51.92 -0.42 1.42 15 28 H 0.17 1.40 8.06 -52.49 -0.42 0.98 15 29 H 0.14 1.01 8.06 -52.49 -0.42 0.58 15 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -30.83 292.18 -10.40 -41.23 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -2.44 Total: -1.97 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.84 Total: -7.43 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.41 Total: -47.73 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.40 Total: -2.66 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.83 -10.40 -41.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066318307.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.312 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds